Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACFJIW_RS08500 Genome accession   NZ_CP170554
Coordinates   2075852..2076910 (+) Length   352 a.a.
NCBI ID   WP_386070669.1    Uniprot ID   -
Organism   Tahibacter sp. UC22_41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2070852..2081910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIW_RS08490 (ACFJIW_08490) - 2072447..2073085 (-) 639 WP_386070667.1 hypothetical protein -
  ACFJIW_RS08495 (ACFJIW_08495) - 2073085..2075613 (-) 2529 WP_386070668.1 penicillin-binding protein 1A -
  ACFJIW_RS08500 (ACFJIW_08500) pilM 2075852..2076910 (+) 1059 WP_386070669.1 pilus assembly protein PilM Machinery gene
  ACFJIW_RS08505 (ACFJIW_08505) - 2076910..2077545 (+) 636 WP_386070670.1 PilN domain-containing protein -
  ACFJIW_RS08510 (ACFJIW_08510) - 2077542..2078255 (+) 714 WP_386070671.1 type 4a pilus biogenesis protein PilO -
  ACFJIW_RS08515 (ACFJIW_08515) - 2078255..2078800 (+) 546 WP_386070672.1 pilus assembly protein PilP -
  ACFJIW_RS08520 (ACFJIW_08520) pilQ 2078824..2081088 (+) 2265 WP_386070673.1 type IV pilus secretin PilQ -
  ACFJIW_RS08525 (ACFJIW_08525) - 2081146..2081577 (-) 432 WP_386070674.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37601.19 Da        Isoelectric Point: 4.3799

>NTDB_id=1057958 ACFJIW_RS08500 WP_386070669.1 2075852..2076910(+) (pilM) [Tahibacter sp. UC22_41]
MGLFSPKAPPLIGVDISSTAVKLLQLSQSGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRALGRSGAKTKFASAA
VAGSAVITKVIPMPADLSEEDLEGQIQVEANQYIPYPIEEVSLDFETLGPVKDNPDMVNVLLAASRTENVDLRVAALDLA
GLGAKVIDVEAFAMENAFKLIADQLAVSKDAVVAVVDVGATMTTLIVLKNQRTIYSREQVFGGKQLTDEVMRRYGLSYEE
SGLAKRQGGLPESYEIEVLEPFKEAMVQQISRLLQFFFAGSEYSKVDQVVLAGGCASIAGVADMVEEQLGVPSVVANPLA
NMSLSSRVQAQTLAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1057958 ACFJIW_RS08500 WP_386070669.1 2075852..2076910(+) (pilM) [Tahibacter sp. UC22_41]
GTGGGCCTGTTCAGTCCGAAAGCGCCGCCGCTGATTGGGGTGGACATCAGTTCGACGGCGGTCAAGCTCCTGCAGCTCAG
TCAGTCGGGTGGCCGCTACCGCGTCGAACACTACGCGGTCGAGCCGCTCCCGCCCAATGCTGTGGTCGAGAAGAACATTG
TCGAGGTCGAGGCCGTCGGCGAGGCCATCCGCCGCGCCCTGGGGCGTTCCGGCGCCAAGACCAAGTTCGCGTCCGCCGCT
GTAGCGGGCTCGGCAGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGTCCGAGGAAGACCTCGAAGGTCAGATCCA
GGTCGAGGCGAACCAGTACATTCCCTACCCGATCGAGGAAGTCAGCCTCGATTTCGAGACGTTGGGGCCCGTCAAGGACA
ACCCCGACATGGTCAACGTGCTGTTGGCCGCCTCGCGTACCGAAAACGTCGATCTGCGCGTCGCCGCGCTGGACCTGGCC
GGACTCGGCGCCAAGGTCATCGACGTCGAGGCGTTCGCGATGGAGAACGCTTTCAAGCTGATTGCAGACCAGCTCGCCGT
ATCCAAGGATGCGGTCGTGGCCGTCGTCGACGTCGGCGCCACGATGACGACCCTGATCGTGCTGAAGAACCAGCGCACGA
TCTATTCCCGTGAACAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTCTCTTACGAGGAA
TCCGGTCTGGCCAAGCGCCAGGGCGGCCTGCCCGAGTCCTACGAGATCGAGGTGCTGGAGCCGTTCAAGGAAGCCATGGT
CCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTTCGCCGGCAGCGAGTACAGCAAGGTCGACCAGGTGGTCCTGGCCGGCG
GCTGCGCGTCCATCGCCGGCGTCGCGGACATGGTGGAAGAGCAACTGGGGGTTCCGAGCGTCGTGGCCAATCCGCTCGCG
AACATGTCGCTGTCCTCCCGCGTGCAGGCGCAGACGCTGGCCCAGGATGCGCCGGCGTTGATGATTGCCTGCGGGCTTGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

53.509

97.159

0.52
  comM Acinetobacter nosocomialis M2

53.509

97.159

0.52
  comM Acinetobacter baylyi ADP1

50.877

97.159

0.494
  pilM Legionella pneumophila strain ERS1305867

44.193

100

0.443

Multiple sequence alignment