Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFJI2_RS25845 Genome accession   NZ_CP170549
Coordinates   5811004..5811504 (-) Length   166 a.a.
NCBI ID   WP_056399811.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_71     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5806004..5816504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJI2_RS25820 (ACFJI2_25820) - 5806322..5807896 (-) 1575 WP_377702479.1 phosphotransferase -
  ACFJI2_RS25825 (ACFJI2_25825) - 5807893..5808240 (-) 348 WP_377702480.1 cupin domain-containing protein -
  ACFJI2_RS25830 (ACFJI2_25830) - 5808249..5809073 (-) 825 WP_377702481.1 hypothetical protein -
  ACFJI2_RS25835 (ACFJI2_25835) - 5809070..5810170 (-) 1101 WP_377702482.1 class II D-tagatose-bisphosphate aldolase non-catalytic subunit -
  ACFJI2_RS25840 (ACFJI2_25840) - 5810237..5810758 (-) 522 WP_377702483.1 hypothetical protein -
  ACFJI2_RS25845 (ACFJI2_25845) ssb 5811004..5811504 (-) 501 WP_056399811.1 single-stranded DNA-binding protein Machinery gene
  ACFJI2_RS25850 (ACFJI2_25850) uvrA 5811744..5814605 (+) 2862 WP_377702484.1 excinuclease ABC subunit UvrA -
  ACFJI2_RS25855 (ACFJI2_25855) - 5814610..5815521 (+) 912 WP_377702485.1 AraC family transcriptional regulator N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17983.21 Da        Isoelectric Point: 5.9417

>NTDB_id=1057922 ACFJI2_RS25845 WP_056399811.1 5811004..5811504(-) (ssb) [Pseudoduganella sp. UC29_71]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKEQTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRQGMGGDAGMDDGGGYDAPAPRQAPAPRPAPAPAPAPRPAPRPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1057922 ACFJI2_RS25845 WP_056399811.1 5811004..5811504(-) (ssb) [Pseudoduganella sp. UC29_71]
ATGGCATCAGTCAACAAAGTCATCATTGTCGGCAACCTGGGCCGCGATCCGGAAATTCGCTACATGCCTAGCGGTGATGC
GATCGCCAACATTGCCGTTGCGACCTCGTACAAGTCGAAGGATCGCAACACCGGCGAGCAAAAAGAGCAAACCGAGTGGC
ACCGTATTTCCTTCTTCGGCCGCCTGGCTGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCCTCGGTCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCCACCGACATCATCGCCGAGCAGATGCAAAT
GCTGGGTGGCCGCCAGGGCATGGGCGGCGACGCCGGCATGGACGACGGCGGCGGCTACGACGCCCCGGCCCCGCGCCAGG
CGCCGGCCCCGCGTCCGGCCCCAGCGCCGGCCCCGGCACCACGCCCGGCCCCGCGCCCTGCGCCGAACTTCTCGGACATG
GACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.841

100

0.56
  ssb Neisseria gonorrhoeae MS11

52.273

100

0.554
  ssb Vibrio cholerae strain A1552

51.111

100

0.554
  ssb Glaesserella parasuis strain SC1401

48.901

100

0.536

Multiple sequence alignment