Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6M93_RS00580 Genome accession   NZ_CP170503
Coordinates   128742..129284 (-) Length   180 a.a.
NCBI ID   WP_039283288.1    Uniprot ID   A0A433N4B3
Organism   Pectobacterium brasiliense strain BSRLOP2CAB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 123742..134284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6M93_RS00545 (V6M93_00545) - 123878..124051 (-) 174 WP_379058966.1 hypothetical protein -
  V6M93_RS00550 (V6M93_00550) - 125261..126124 (-) 864 WP_379060258.1 hypothetical protein -
  V6M93_RS00555 (V6M93_00555) - 126121..127230 (-) 1110 WP_379058969.1 hypothetical protein -
  V6M93_RS00560 (V6M93_00560) - 127329..127508 (-) 180 WP_379058972.1 hypothetical protein -
  V6M93_RS00565 (V6M93_00565) - 127578..127868 (+) 291 WP_379058975.1 transposase -
  V6M93_RS00570 (V6M93_00570) - 127994..128134 (+) 141 Protein_113 LacI family transcriptional regulator -
  V6M93_RS00575 (V6M93_00575) - 128160..128672 (-) 513 WP_379058978.1 hypothetical protein -
  V6M93_RS00580 (V6M93_00580) ssb 128742..129284 (-) 543 WP_039283288.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V6M93_RS00585 (V6M93_00585) uvrA 129534..132368 (+) 2835 WP_014916582.1 excinuclease ABC subunit UvrA -
  V6M93_RS00590 (V6M93_00590) - 132384..132803 (+) 420 WP_039558308.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  V6M93_RS00595 (V6M93_00595) cas6f 133599..134153 (-) 555 WP_039509855.1 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19115.08 Da        Isoelectric Point: 5.2456

>NTDB_id=1057797 V6M93_RS00580 WP_039283288.1 128742..129284(-) (ssb) [Pectobacterium brasiliense strain BSRLOP2CAB]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGNAGGGQQQGGWGQPQQPQGGNQFSGGAQSQQRPAQ
NSAPAQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1057797 V6M93_RS00580 WP_039283288.1 128742..129284(-) (ssb) [Pectobacterium brasiliense strain BSRLOP2CAB]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACGCTGGCTACGTCGGAAAGCTGGCGTGACAAGCAAACCGGTGAGCAGAAAGAGAAGACCG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCAGAAGTCGCGGGCGAATACCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGCGCACCAGCAGGCGGTAACGCAGGTGGCGGTCAGCAACAAG
GCGGTTGGGGTCAACCTCAGCAACCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAATCTCAACAGCGCCCGGCTCAG
AACAGCGCTCCAGCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A433N4B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.193

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.297

100

0.589
  ssb Neisseria meningitidis MC58

46.369

99.444

0.461
  ssb Neisseria gonorrhoeae MS11

46.369

99.444

0.461

Multiple sequence alignment