Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFIOZ_RS00720 Genome accession   NZ_CP170448
Coordinates   157192..157836 (+) Length   214 a.a.
NCBI ID   WP_386081586.1    Uniprot ID   -
Organism   Vreelandella sp. F11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 152192..162836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOZ_RS00710 (ACFIOZ_00710) uvrA 152698..155544 (-) 2847 WP_386081581.1 excinuclease ABC subunit UvrA -
  ACFIOZ_RS00715 (ACFIOZ_00715) - 155738..157117 (+) 1380 WP_386081583.1 MFS transporter -
  ACFIOZ_RS00720 (ACFIOZ_00720) ssb 157192..157836 (+) 645 WP_386081586.1 single-stranded DNA-binding protein Machinery gene
  ACFIOZ_RS00725 (ACFIOZ_00725) - 157889..158779 (+) 891 WP_386081588.1 sugar nucleotide-binding protein -
  ACFIOZ_RS00730 (ACFIOZ_00730) - 158776..159510 (+) 735 WP_386081590.1 lysophospholipid acyltransferase family protein -
  ACFIOZ_RS00735 (ACFIOZ_00735) fabB 159578..160795 (-) 1218 WP_386081591.1 beta-ketoacyl-ACP synthase I -
  ACFIOZ_RS00740 (ACFIOZ_00740) fabA 160809..161324 (-) 516 WP_226250564.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23378.44 Da        Isoelectric Point: 5.6744

>NTDB_id=1057485 ACFIOZ_RS00720 WP_386081586.1 157192..157836(+) (ssb) [Vreelandella sp. F11]
MARGINKVILIGNLGQDPEVRFTPSGTAVANLNLATTDTWMDRQSGQRQERTEWHRVVMFNKTAEIAQQYLKKGSKVYIE
GRLQTRKWQDQNGQDRYSTEIVANDMQMLDGRSGDFQGGGAPQNNYSQNAPQNVPQNAPAQNSPAAHHQGGYPPQGGAPQ
GGNNYPGGQSPQPPRPAQPAPQQGNQPPPPNQQNSSYGAPDPGNFDDFDDEIPF

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1057485 ACFIOZ_RS00720 WP_386081586.1 157192..157836(+) (ssb) [Vreelandella sp. F11]
ATGGCTCGCGGCATTAACAAGGTCATTTTAATTGGTAACCTCGGGCAGGATCCAGAGGTGCGCTTCACCCCCAGCGGCAC
CGCCGTGGCCAACCTGAACCTGGCGACTACCGATACCTGGATGGATCGTCAGAGCGGTCAGCGCCAAGAGCGTACCGAGT
GGCACCGGGTGGTGATGTTCAATAAAACCGCCGAAATTGCCCAGCAGTACCTGAAAAAAGGCTCCAAGGTCTATATTGAA
GGGCGTTTGCAAACCCGTAAGTGGCAAGACCAGAACGGCCAGGATCGCTACTCGACGGAAATCGTCGCCAACGACATGCA
GATGCTCGATGGTCGCAGCGGTGACTTCCAGGGCGGCGGCGCTCCGCAGAATAACTATTCTCAGAACGCTCCTCAGAACG
TCCCCCAGAATGCACCGGCTCAAAATAGTCCTGCCGCTCATCACCAAGGCGGCTATCCCCCGCAGGGTGGCGCACCCCAA
GGCGGGAATAATTACCCCGGCGGGCAGAGTCCGCAACCGCCTCGTCCCGCTCAGCCAGCGCCGCAGCAGGGCAATCAACC
GCCCCCGCCTAACCAGCAAAACAGCAGCTACGGCGCCCCGGATCCGGGTAATTTTGACGACTTCGACGATGAGATTCCGT
TCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.059

100

0.486
  ssb Glaesserella parasuis strain SC1401

47.418

99.533

0.472
  ssb Neisseria meningitidis MC58

43.81

98.131

0.43
  ssb Neisseria gonorrhoeae MS11

43.81

98.131

0.43

Multiple sequence alignment