Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGF   Type   Machinery gene
Locus tag   ACFIOK_RS06425 Genome accession   NZ_CP170434
Coordinates   1231265..1231762 (+) Length   165 a.a.
NCBI ID   WP_001829055.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1226265..1236762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS06385 - 1226320..1227306 (+) 987 WP_000161314.1 ROK family glucokinase -
  ACFIOK_RS06390 - 1227306..1227635 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOK_RS06395 - 1227632..1228255 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACFIOK_RS06400 comGA 1228307..1229270 (+) 964 Protein_1225 competence type IV pilus ATPase ComGA -
  ACFIOK_RS06405 comGB 1229242..1230312 (+) 1071 WP_017804891.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOK_RS06410 comGC 1230326..1230637 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOK_RS06415 comGD 1230615..1231061 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOK_RS06420 comGE 1231048..1231347 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACFIOK_RS06425 comGF 1231265..1231762 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOK_RS06430 - 1231859..1232005 (+) 147 WP_001789879.1 hypothetical protein -
  ACFIOK_RS06435 - 1231995..1232519 (+) 525 WP_001015121.1 shikimate kinase -
  ACFIOK_RS06440 gcvT 1232678..1233769 (+) 1092 WP_200654418.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOK_RS06445 gcvPA 1233789..1235135 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACFIOK_RS06450 gcvPB 1235128..1236600 (+) 1473 WP_000202187.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence


Protein


Download         Length: 165 a.a.        Molecular weight: 19183.92 Da        Isoelectric Point: 10.2192

>NTDB_id=1057320 ACFIOK_RS06425 WP_001829055.1 1231265..1231762(+) (comGF) [Staphylococcus aureus strain t315]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISITLLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDRNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1057320 ACFIOK_RS06425 WP_001829055.1 1231265..1231762(+) (comGF) [Staphylococcus aureus strain t315]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTCATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAACTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGAGTAGATAGAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.182

100

0.982

  comGF Staphylococcus aureus MW2

98.182

100

0.982


Multiple sequence alignment