Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   ACFIOK_RS06405 Genome accession   NZ_CP170434
Coordinates   1229242..1230312 (+) Length   356 a.a.
NCBI ID   WP_017804891.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1224242..1235312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS06375 - 1224676..1226139 (+) 1464 WP_001017867.1 rhomboid family protein -
  ACFIOK_RS06380 - 1226120..1226323 (+) 204 WP_000087561.1 YqgQ family protein -
  ACFIOK_RS06385 - 1226320..1227306 (+) 987 WP_000161314.1 ROK family glucokinase -
  ACFIOK_RS06390 - 1227306..1227635 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  ACFIOK_RS06395 - 1227632..1228255 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACFIOK_RS06400 comGA 1228307..1229270 (+) 964 Protein_1225 competence type IV pilus ATPase ComGA -
  ACFIOK_RS06405 comGB 1229242..1230312 (+) 1071 WP_017804891.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACFIOK_RS06410 comGC 1230326..1230637 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACFIOK_RS06415 comGD 1230615..1231061 (+) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACFIOK_RS06420 comGE 1231048..1231347 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACFIOK_RS06425 comGF 1231265..1231762 (+) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACFIOK_RS06430 - 1231859..1232005 (+) 147 WP_001789879.1 hypothetical protein -
  ACFIOK_RS06435 - 1231995..1232519 (+) 525 WP_001015121.1 shikimate kinase -
  ACFIOK_RS06440 gcvT 1232678..1233769 (+) 1092 WP_200654418.1 glycine cleavage system aminomethyltransferase GcvT -
  ACFIOK_RS06445 gcvPA 1233789..1235135 (+) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41429.81 Da        Isoelectric Point: 10.0606

>NTDB_id=1057316 ACFIOK_RS06405 WP_017804891.1 1229242..1230312(+) (comGB) [Staphylococcus aureus strain t315]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEIGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1057316 ACFIOK_RS06405 WP_017804891.1 1229242..1230312(+) (comGB) [Staphylococcus aureus strain t315]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATAGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.719

100

0.997
  comGB Staphylococcus aureus N315

99.719

100

0.997

Multiple sequence alignment