Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFIOT_RS12245 Genome accession   NZ_CP170414
Coordinates   2441965..2442468 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain t5047     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2436965..2447468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOT_RS12205 - 2437388..2437969 (-) 582 WP_054189511.1 histidine phosphatase family protein -
  ACFIOT_RS12210 - 2438148..2438357 (+) 210 Protein_2360 hypothetical protein -
  ACFIOT_RS12215 - 2438396..2438650 (-) 255 WP_054189510.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACFIOT_RS12220 - 2438943..2439206 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  ACFIOT_RS12225 - 2439344..2439916 (-) 573 WP_054189509.1 PepSY domain-containing protein -
  ACFIOT_RS12230 - 2440096..2440464 (-) 369 WP_054189508.1 YxeA family protein -
  ACFIOT_RS12235 - 2441231..2441548 (-) 318 WP_054189507.1 hypothetical protein -
  ACFIOT_RS12240 rpsR 2441671..2441913 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACFIOT_RS12245 ssbA 2441965..2442468 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  ACFIOT_RS12250 rpsF 2442489..2442785 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACFIOT_RS12255 - 2443030..2443221 (+) 192 WP_070016643.1 hypothetical protein -
  ACFIOT_RS12260 ychF 2443307..2444404 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACFIOT_RS12265 - 2444416..2444619 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  ACFIOT_RS12270 - 2444649..2445530 (-) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  ACFIOT_RS12275 - 2445685..2446530 (-) 846 WP_054189506.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=1056996 ACFIOT_RS12245 WP_000934799.1 2441965..2442468(-) (ssbA) [Staphylococcus aureus strain t5047]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1056996 ACFIOT_RS12245 WP_000934799.1 2441965..2442468(-) (ssbA) [Staphylococcus aureus strain t5047]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment