Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFIOE_RS05780 Genome accession   NZ_CP170411
Coordinates   1189888..1190760 (+) Length   290 a.a.
NCBI ID   WP_000593194.1    Uniprot ID   A0A9P3DKN4
Organism   Staphylococcus aureus strain t002     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1184888..1195760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOE_RS05760 sucC 1185002..1186168 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFIOE_RS05765 sucD 1186190..1187098 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ACFIOE_RS05770 - 1187325..1188443 (+) 1119 WP_054192888.1 LysM peptidoglycan-binding domain-containing protein -
  ACFIOE_RS05775 fmhC 1188471..1189715 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  ACFIOE_RS05780 dprA 1189888..1190760 (+) 873 WP_000593194.1 DNA-processing protein DprA Machinery gene
  ACFIOE_RS05785 topA 1190934..1193009 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  ACFIOE_RS05790 trmFO 1193165..1194472 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33541.01 Da        Isoelectric Point: 9.5093

>NTDB_id=1056927 ACFIOE_RS05780 WP_000593194.1 1189888..1190760(+) (dprA) [Staphylococcus aureus strain t002]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVLLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1056927 ACFIOE_RS05780 WP_000593194.1 1189888..1190760(+) (dprA) [Staphylococcus aureus strain t002]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCTTTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

100

100

1
  dprA Staphylococcus aureus MW2

99.655

100

0.997
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.809

97.586

0.369
  dprA/cilB/dalA Streptococcus mitis SK321

37.456

97.586

0.366

Multiple sequence alignment