Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFIOR_RS12165 Genome accession   NZ_CP170409
Coordinates   2400460..2400963 (-) Length   167 a.a.
NCBI ID   WP_168768369.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2395460..2405963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS12130 - 2395515..2395778 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  ACFIOR_RS12135 - 2395916..2396488 (-) 573 WP_000769722.1 PepSY domain-containing protein -
  ACFIOR_RS12140 - 2396669..2397037 (-) 369 WP_410539217.1 YxeA family protein -
  ACFIOR_RS12145 selX 2397406..2398017 (-) 612 WP_410539219.1 staphylococcal enterotoxin-like toxin X -
  ACFIOR_RS12150 - 2398223..2398923 (+) 701 Protein_2349 tyrosine-type recombinase/integrase -
  ACFIOR_RS12155 - 2398962..2399900 (+) 939 WP_001817700.1 Abi family protein -
  ACFIOR_RS12160 rpsR 2400166..2400408 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACFIOR_RS12165 ssbA 2400460..2400963 (-) 504 WP_168768369.1 single-stranded DNA-binding protein Machinery gene
  ACFIOR_RS12170 rpsF 2400984..2401280 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACFIOR_RS12175 - 2401524..2401715 (+) 192 WP_001052483.1 hypothetical protein -
  ACFIOR_RS12180 ychF 2401801..2402898 (-) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACFIOR_RS12185 - 2402910..2403113 (-) 204 WP_000157345.1 DUF951 domain-containing protein -
  ACFIOR_RS12190 - 2403143..2404024 (-) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  ACFIOR_RS12195 - 2404181..2405026 (-) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18569.21 Da        Isoelectric Point: 4.7305

>NTDB_id=1056912 ACFIOR_RS12165 WP_168768369.1 2400460..2400963(-) (ssbA) [Staphylococcus aureus strain t359]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNMKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1056912 ACFIOR_RS12165 WP_168768369.1 2400460..2400963(-) (ssbA) [Staphylococcus aureus strain t359]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACATGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment