Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | ACFIOQ_RS12650 | Genome accession | NZ_CP170404 |
| Coordinates | 2494045..2494548 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain t7960 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2473212..2498608 | 2494045..2494548 | within | 0 |
Gene organization within MGE regions
Location: 2473212..2498608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFIOQ_RS12495 | - | 2473212..2473466 (-) | 255 | WP_000466742.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| ACFIOQ_RS12500 | - | 2473760..2474023 (+) | 264 | WP_001055897.1 | helix-turn-helix domain-containing protein | - |
| ACFIOQ_RS12505 | - | 2474161..2474733 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| ACFIOQ_RS12510 | - | 2474914..2475282 (-) | 369 | WP_000849165.1 | YxeA family protein | - |
| ACFIOQ_RS12515 | selX | 2475651..2476262 (-) | 612 | WP_000475322.1 | staphylococcal enterotoxin-like toxin X | - |
| ACFIOQ_RS12520 | - | 2476503..2477162 (+) | 660 | Protein_2423 | tyrosine-type recombinase/integrase | - |
| ACFIOQ_RS12525 | - | 2477213..2478151 (+) | 939 | WP_072357673.1 | Abi family protein | - |
| ACFIOQ_RS12530 | - | 2478947..2479132 (-) | 186 | WP_001286805.1 | hypothetical protein | - |
| ACFIOQ_RS12535 | - | 2479134..2479244 (-) | 111 | WP_000139423.1 | hypothetical protein | - |
| ACFIOQ_RS12540 | - | 2479315..2479467 (-) | 153 | WP_001788502.1 | hypothetical protein | - |
| ACFIOQ_RS12545 | - | 2479842..2480399 (+) | 558 | WP_001035615.1 | DUF4888 domain-containing protein | - |
| ACFIOQ_RS12550 | seb | 2480477..2481277 (-) | 801 | WP_000278086.1 | staphylococcal enterotoxin type B | - |
| ACFIOQ_RS12555 | - | 2481585..2482154 (-) | 570 | WP_001293089.1 | terminase small subunit | - |
| ACFIOQ_RS12560 | - | 2482151..2482492 (-) | 342 | WP_000358778.1 | hypothetical protein | - |
| ACFIOQ_RS12565 | - | 2482495..2483022 (-) | 528 | WP_000771368.1 | spore coat protein | - |
| ACFIOQ_RS12570 | - | 2483075..2483728 (-) | 654 | WP_000214172.1 | hypothetical protein | - |
| ACFIOQ_RS12575 | - | 2483759..2484100 (-) | 342 | WP_001190614.1 | hypothetical protein | - |
| ACFIOQ_RS12580 | - | 2484550..2485191 (-) | 642 | WP_001047697.1 | hypothetical protein | - |
| ACFIOQ_RS12585 | - | 2485188..2485568 (-) | 381 | WP_000356942.1 | hypothetical protein | - |
| ACFIOQ_RS12590 | - | 2485878..2487587 (-) | 1710 | WP_000447469.1 | DUF927 domain-containing protein | - |
| ACFIOQ_RS12595 | - | 2487601..2488470 (-) | 870 | WP_001002702.1 | primase alpha helix C-terminal domain-containing protein | - |
| ACFIOQ_RS12600 | tscT | 2488535..2488861 (-) | 327 | WP_000383747.1 | type II toxin-antitoxin system toxin TscT | - |
| ACFIOQ_RS12605 | tscA | 2488864..2489073 (-) | 210 | WP_001058495.1 | type II toxin-antitoxin system antitoxin TscA | - |
| ACFIOQ_RS12610 | - | 2489066..2489212 (-) | 147 | WP_000784887.1 | hypothetical protein | - |
| ACFIOQ_RS12615 | - | 2489224..2489496 (-) | 273 | WP_001138298.1 | helix-turn-helix domain-containing protein | - |
| ACFIOQ_RS12620 | - | 2489497..2489709 (-) | 213 | WP_001063624.1 | helix-turn-helix domain-containing protein | - |
| ACFIOQ_RS12625 | - | 2489858..2490592 (+) | 735 | WP_000142630.1 | helix-turn-helix domain-containing protein | - |
| ACFIOQ_RS12630 | - | 2490891..2492105 (+) | 1215 | WP_000270126.1 | tyrosine-type recombinase/integrase | - |
| ACFIOQ_RS12635 | - | 2492108..2492806 (+) | 699 | WP_000608381.1 | DUF3800 domain-containing protein | - |
| ACFIOQ_RS12640 | - | 2492793..2493419 (+) | 627 | WP_000281092.1 | hypothetical protein | - |
| ACFIOQ_RS12645 | rpsR | 2493751..2493993 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| ACFIOQ_RS12650 | ssbA | 2494045..2494548 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| ACFIOQ_RS12655 | rpsF | 2494569..2494865 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| ACFIOQ_RS12660 | - | 2495109..2495300 (+) | 192 | WP_001052483.1 | hypothetical protein | - |
| ACFIOQ_RS12665 | ychF | 2495386..2496483 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| ACFIOQ_RS12670 | - | 2496495..2496698 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| ACFIOQ_RS12675 | - | 2496728..2497609 (-) | 882 | WP_000373075.1 | mechanosensitive ion channel family protein | - |
| ACFIOQ_RS12680 | - | 2497763..2498608 (-) | 846 | WP_001621659.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=1056828 ACFIOQ_RS12650 WP_000934799.1 2494045..2494548(-) (ssbA) [Staphylococcus aureus strain t7960]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=1056828 ACFIOQ_RS12650 WP_000934799.1 2494045..2494548(-) (ssbA) [Staphylococcus aureus strain t7960]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |