Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACFIOP_RS06150 Genome accession   NZ_CP170392
Coordinates   1252773..1253645 (+) Length   290 a.a.
NCBI ID   WP_142381562.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t442     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1247773..1258645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOP_RS06130 sucC 1247887..1249053 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACFIOP_RS06135 sucD 1249075..1249983 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  ACFIOP_RS06140 - 1250210..1251328 (+) 1119 WP_001041666.1 LysM peptidoglycan-binding domain-containing protein -
  ACFIOP_RS06145 fmhC 1251356..1252600 (+) 1245 WP_000672869.1 FemA/FemB family glycyltransferase FmhC -
  ACFIOP_RS06150 dprA 1252773..1253645 (+) 873 WP_142381562.1 DNA-processing protein DprA Machinery gene
  ACFIOP_RS06155 topA 1253819..1255894 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  ACFIOP_RS06160 trmFO 1256050..1257357 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33571.03 Da        Isoelectric Point: 9.5093

>NTDB_id=1056634 ACFIOP_RS06150 WP_142381562.1 1252773..1253645(+) (dprA) [Staphylococcus aureus strain t442]
MIKLFLLKLYWAHFSTKQIHQFLMAYPNVIKEEGRKKDSYLCEWVNREENVLLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDSEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGTKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1056634 ACFIOP_RS06150 WP_142381562.1 1252773..1253645(+) (dprA) [Staphylococcus aureus strain t442]
TTGATTAAACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGAGGGAAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCTTTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATTCTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTACTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

99.655

100

0.997
  dprA Staphylococcus aureus MW2

99.31

100

0.993
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

37.456

97.586

0.366
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

37.456

97.586

0.366
  dprA/cilB/dalA Streptococcus pneumoniae D39

37.456

97.586

0.366
  dprA/cilB/dalA Streptococcus pneumoniae R6

37.456

97.586

0.366
  dprA/cilB/dalA Streptococcus mitis SK321

37.102

97.586

0.362

Multiple sequence alignment