Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   O1Q79_RS06685 Genome accession   NZ_CP170386
Coordinates   1385895..1387283 (+) Length   462 a.a.
NCBI ID   WP_386691137.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1380895..1392283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS06660 (O1Q79_01332) - 1380901..1383504 (-) 2604 WP_386691122.1 penicillin-binding protein 1A -
  O1Q79_RS06665 (O1Q79_01333) - 1383621..1384436 (+) 816 WP_386691125.1 hypothetical protein -
  O1Q79_RS06670 (O1Q79_01334) - 1384420..1384974 (+) 555 WP_386691128.1 hypothetical protein -
  O1Q79_RS06675 (O1Q79_01335) - 1384952..1385491 (+) 540 WP_386691131.1 competence protein -
  O1Q79_RS06680 (O1Q79_01336) - 1385493..1385885 (+) 393 WP_386691134.1 pilus assembly protein PilP -
  O1Q79_RS06685 (O1Q79_01337) comE 1385895..1387283 (+) 1389 WP_386691137.1 type IV pilus secretin PilQ Machinery gene
  O1Q79_RS06690 (O1Q79_01338) acpP 1387322..1387552 (-) 231 WP_132302013.1 acyl carrier protein -
  O1Q79_RS06695 (O1Q79_01339) fabG 1387861..1388589 (-) 729 WP_386691141.1 3-oxoacyl-ACP reductase FabG -
  O1Q79_RS06700 (O1Q79_01340) fabD 1388610..1389551 (-) 942 WP_386691144.1 ACP S-malonyltransferase -
  O1Q79_RS06705 (O1Q79_01341) - 1389602..1390552 (-) 951 WP_386691147.1 beta-ketoacyl-ACP synthase III -
  O1Q79_RS06710 (O1Q79_01342) plsX 1390573..1391592 (-) 1020 WP_386691150.1 phosphate acyltransferase PlsX -
  O1Q79_RS06715 (O1Q79_01343) rpmF 1391614..1391784 (-) 171 WP_132302023.1 50S ribosomal protein L32 -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50706.98 Da        Isoelectric Point: 6.3217

>NTDB_id=1056522 O1Q79_RS06685 WP_386691137.1 1385895..1387283(+) (comE) [Lonepinella sp. MS14434]
MNLLKFILKYGVFFCFFAAYSYAESDHATFSIRLKQAPLVTTLQQLALEQNANLIINDELTGTLSLQLENTTLDQLFQAV
AKIKNLSLLKEKGIYYLTQESIPQDNALNNLPIMAEFDSVPTIQPLHTTTLKLHFAKASEVMKSLTTGNGSLLSGEGSIS
FDDRSNVLIVKDNALSIKNIRKLVKELDKPIEQIAIEARIVTITDESLQELGVRWGLFDPTSSSHKVAGSLAANGFNNIT
DNLNVNFGAVNTPAGSLALQVAKINGRLLDLELTALERENNVKIIASPKLLTTNKKSASIKQGTEIPYVSTNEKSGSQNV
EFREAVLGLEVTPHISQDNAILLDLIVSQNSPGASVQSGEGEVITIDKQEINTQVFAKDGETIVLGGVFQDTLSKGVDKV
PVLGDIPVVKHLFRKQSDKHQKRELVIFVTPHILKQGQSLQDVQKNRQKDNKIAENNAKLIE

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1056522 O1Q79_RS06685 WP_386691137.1 1385895..1387283(+) (comE) [Lonepinella sp. MS14434]
ATGAATTTATTAAAATTTATCTTAAAGTACGGTGTCTTTTTTTGTTTTTTTGCTGCTTATAGCTATGCTGAATCAGATCA
TGCCACTTTTTCTATTCGCTTAAAACAGGCGCCATTAGTTACCACGTTACAACAGCTTGCGTTAGAACAAAATGCAAATT
TAATCATTAATGATGAATTAACTGGAACATTATCATTACAATTAGAAAACACTACGCTTGATCAGCTTTTTCAAGCCGTC
GCAAAAATTAAAAATCTGTCGTTGCTCAAAGAAAAAGGAATCTATTATTTGACTCAAGAGAGTATTCCACAAGACAATGC
GTTAAATAATTTACCGATAATGGCTGAATTTGATTCTGTACCTACAATACAACCATTACATACCACCACGCTAAAATTGC
ATTTCGCCAAAGCATCCGAAGTAATGAAATCTTTAACTACTGGTAATGGATCTTTATTATCAGGGGAAGGCAGCATTAGC
TTTGATGATCGCAGTAATGTATTAATCGTGAAAGACAATGCTCTGTCGATTAAAAATATTCGTAAGCTGGTCAAAGAGTT
GGACAAACCAATAGAACAAATTGCGATTGAAGCGCGCATTGTTACCATTACAGATGAAAGTTTACAAGAATTAGGGGTTC
GTTGGGGATTATTCGATCCGACAAGCAGTTCCCATAAAGTGGCAGGAAGCCTTGCTGCCAATGGGTTTAATAATATCACT
GATAATTTAAATGTGAATTTCGGCGCAGTCAATACCCCTGCTGGTTCGTTGGCATTACAAGTGGCCAAAATTAATGGTCG
ATTATTAGACCTAGAATTAACCGCACTTGAGCGAGAAAATAACGTCAAAATTATTGCTAGCCCCAAATTACTTACCACTA
ACAAAAAATCAGCGAGTATTAAACAAGGTACTGAAATCCCTTATGTATCGACCAACGAAAAAAGCGGTTCGCAAAATGTA
GAATTTCGTGAAGCCGTATTAGGCTTAGAGGTAACACCCCATATTTCACAAGATAATGCCATTTTGTTGGATCTTATTGT
CAGCCAAAATTCCCCAGGAGCTTCGGTACAATCCGGCGAGGGAGAAGTAATCACAATTGATAAACAAGAAATTAACACGC
AAGTTTTTGCCAAAGACGGTGAAACTATTGTATTAGGTGGGGTATTTCAAGATACATTAAGTAAAGGAGTCGATAAAGTC
CCTGTATTAGGGGATATTCCTGTGGTAAAACATCTATTCCGTAAACAAAGTGATAAACACCAGAAACGAGAATTAGTGAT
TTTTGTTACCCCACATATTTTAAAACAAGGACAATCTCTTCAAGATGTTCAGAAAAACCGTCAGAAAGACAACAAAATTG
CTGAAAACAACGCAAAGTTAATTGAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(130-193)

Bacterial type II and III secretion system protein (Secretin)

(275-435)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

63.677

96.537

0.615
  comE Haemophilus influenzae 86-028NP

62.78

96.537

0.606
  comE Glaesserella parasuis strain SC1401

53.972

92.641

0.5
  pilQ Vibrio campbellii strain DS40M4

40.515

92.424

0.374
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

39.535

93.074

0.368
  pilQ Vibrio cholerae strain A1552

39.535

93.074

0.368

Multiple sequence alignment