Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1Q79_RS06380 Genome accession   NZ_CP170386
Coordinates   1320802..1322022 (-) Length   406 a.a.
NCBI ID   WP_386690993.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315802..1327022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS06350 (O1Q79_01271) menH 1316338..1317099 (-) 762 WP_386690981.1 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase -
  O1Q79_RS06355 (O1Q79_01272) - 1317224..1318591 (-) 1368 WP_386690982.1 alanine/glycine:cation symporter family protein -
  O1Q79_RS06360 (O1Q79_01273) - 1318999..1319265 (-) 267 WP_386690985.1 GNAT family N-acetyltransferase -
  O1Q79_RS06365 (O1Q79_01274) yacG 1319268..1319468 (-) 201 WP_132301902.1 DNA gyrase inhibitor YacG -
  O1Q79_RS06370 (O1Q79_01275) coaE 1319452..1320081 (-) 630 WP_386690988.1 dephospho-CoA kinase -
  O1Q79_RS06375 (O1Q79_01276) - 1320107..1320769 (-) 663 WP_386690991.1 prepilin peptidase -
  O1Q79_RS06380 (O1Q79_01277) pilC 1320802..1322022 (-) 1221 WP_386690993.1 type II secretion system F family protein Machinery gene
  O1Q79_RS06385 (O1Q79_01278) pilB 1322032..1323435 (-) 1404 WP_386690995.1 GspE/PulE family protein Machinery gene
  O1Q79_RS06390 (O1Q79_01279) pilA 1323438..1323911 (-) 474 WP_386690997.1 prepilin peptidase-dependent pilin Machinery gene
  O1Q79_RS06395 (O1Q79_01280) ampD 1324035..1324580 (+) 546 WP_386690999.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O1Q79_RS06400 (O1Q79_01281) - 1324584..1325234 (+) 651 WP_386691001.1 HAD family hydrolase -
  O1Q79_RS06405 (O1Q79_01282) bamE 1325313..1325729 (-) 417 WP_386691003.1 outer membrane protein assembly factor BamE -
  O1Q79_RS06410 (O1Q79_01283) yejK 1325792..1326811 (-) 1020 WP_386691005.1 nucleoid-associated protein YejK -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46189.06 Da        Isoelectric Point: 10.0264

>NTDB_id=1056519 O1Q79_RS06380 WP_386690993.1 1320802..1322022(-) (pilC) [Lonepinella sp. MS14434]
MKLKMYRWQGINRLNQKQKGVLIAESEQIARQQLLNRGLQQIKLQQNWQLSTKPNQAEICDTLLQLAILLKSSVPLKNSL
LILLQNCTNIQLNLWLHQLLNQLETGLSFSQALQNQGQFLTLQERQLIQVGEMTGKLATVCNQIAEHRQQSVALQRKLQK
ILLYPMMVLGISVILTALLLIFIVPQFADMYGDNQAQLPFFTQLLLFLSVLLQQYFWLIAVLIVGIIILIKRQLKSSIWL
NQLKIKLISNTPILGNIVQLSRLVGFCRGLHLMLKSGVPLNQALQSFLPQKKTWQNKIELQGDLTLIQEIQSMLHWITQG
YAFSVAVGAELFPMQAQQMLQVGEQSGQLSQMLLHIAESYQQQLDHKIDLLSQMLEPLLMVVIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1056519 O1Q79_RS06380 WP_386690993.1 1320802..1322022(-) (pilC) [Lonepinella sp. MS14434]
ATGAAACTCAAAATGTACCGCTGGCAAGGTATTAATCGGTTAAATCAAAAACAAAAAGGCGTTTTAATTGCTGAAAGTGA
ACAAATCGCACGTCAACAATTATTAAACCGAGGTTTACAGCAAATTAAATTACAGCAAAACTGGCAATTATCCACTAAAC
CGAATCAGGCAGAAATTTGTGATACCTTATTACAATTAGCAATTTTATTAAAATCTTCTGTTCCGTTAAAAAATAGCTTA
TTGATTTTATTGCAAAATTGTACCAATATTCAGTTAAATTTGTGGTTACATCAGCTATTAAATCAACTTGAAACAGGGTT
GTCTTTTTCTCAGGCATTACAGAATCAAGGGCAATTTTTAACATTACAAGAACGCCAATTAATTCAAGTCGGTGAAATGA
CGGGTAAACTGGCAACGGTGTGTAATCAAATTGCCGAGCATCGTCAACAATCGGTGGCATTACAACGAAAATTGCAGAAA
ATCTTGTTGTATCCGATGATGGTACTCGGTATTTCCGTGATATTGACCGCACTTTTACTGATTTTTATTGTGCCACAATT
TGCCGATATGTATGGTGATAATCAAGCTCAATTACCGTTCTTCACCCAACTGTTATTATTTTTATCGGTGCTGTTACAGC
AATATTTCTGGCTAATTGCTGTGCTGATTGTTGGCATTATTATTCTGATTAAACGTCAATTAAAATCATCGATCTGGCTG
AATCAACTCAAAATAAAATTAATCTCTAACACCCCCATATTAGGCAATATTGTACAACTTTCTAGGTTGGTAGGATTTTG
TCGTGGCTTGCATTTAATGCTGAAATCAGGTGTGCCATTAAATCAGGCATTGCAGTCATTTTTACCCCAAAAGAAAACTT
GGCAAAACAAGATCGAATTACAAGGGGATTTAACTTTAATTCAAGAAATTCAGTCTATGCTTCATTGGATTACACAAGGC
TATGCTTTTTCAGTAGCAGTGGGAGCAGAATTATTTCCGATGCAAGCTCAACAAATGTTGCAGGTAGGTGAGCAATCGGG
ACAACTTTCACAAATGTTACTGCATATTGCAGAGAGTTATCAGCAACAGCTCGATCATAAAATTGATCTGCTTTCACAAA
TGTTAGAGCCATTGTTAATGGTGGTGATTGGTGGACTGATTGGTTTGATTATGTTGGGAATGTATTTGCCGATCTTTAAT
ATGGGTTCGTTAATTCAATGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

60.099

100

0.601
  pilC Haemophilus influenzae 86-028NP

59.852

100

0.599
  pilC Glaesserella parasuis strain SC1401

40.15

98.768

0.397

Multiple sequence alignment