Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB5G97_RS02125 Genome accession   NZ_CP170371
Coordinates   445314..445901 (-) Length   195 a.a.
NCBI ID   WP_279465387.1    Uniprot ID   -
Organism   Aeromonas veronii strain Aer12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 440314..450901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5G97_RS02100 (AB5G97_02100) cspA 441621..441833 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  AB5G97_RS02105 (AB5G97_02105) yjbD 442428..442712 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  AB5G97_RS02110 (AB5G97_02110) - 442859..443761 (-) 903 WP_236351289.1 cation diffusion facilitator family transporter -
  AB5G97_RS02115 (AB5G97_02115) - 444223..444348 (+) 126 WP_019445191.1 hypothetical protein -
  AB5G97_RS02120 (AB5G97_02120) - 444421..445164 (-) 744 WP_376870015.1 substrate-binding periplasmic protein -
  AB5G97_RS02125 (AB5G97_02125) ssb 445314..445901 (-) 588 WP_279465387.1 single-stranded DNA-binding protein Machinery gene
  AB5G97_RS02130 (AB5G97_02130) uvrA 446272..449100 (+) 2829 WP_376869232.1 excinuclease ABC subunit UvrA -
  AB5G97_RS02135 (AB5G97_02135) - 449222..450895 (+) 1674 WP_376869233.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21613.14 Da        Isoelectric Point: 5.9301

>NTDB_id=1056354 AB5G97_RS02125 WP_279465387.1 445314..445901(-) (ssb) [Aeromonas veronii strain Aer12]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGSQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1056354 AB5G97_RS02125 WP_279465387.1 445314..445901(-) (ssb) [Aeromonas veronii strain Aer12]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTACTGGTCGACAGTTT
CACTGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGTATGGGCCAGAACATGGGTAGCCAATCCCAGG
GTAACTGGGGTCAGCCACAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

54.922

98.974

0.544
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456
  ssb Neisseria meningitidis MC58

46.316

97.436

0.451

Multiple sequence alignment