Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFE33_RS08160 Genome accession   NZ_CP170339
Coordinates   1694616..1695113 (-) Length   165 a.a.
NCBI ID   WP_380052133.1    Uniprot ID   -
Organism   Falsihalocynthiibacter sp. SS001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1689616..1700113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFE33_RS08140 (ACFE33_08140) - 1690121..1691047 (-) 927 WP_380052124.1 site-specific tyrosine recombinase XerD -
  ACFE33_RS08145 (ACFE33_08145) - 1691050..1692612 (-) 1563 WP_380052127.1 hypothetical protein -
  ACFE33_RS08150 (ACFE33_08150) - 1692934..1693443 (+) 510 WP_380058684.1 shikimate kinase -
  ACFE33_RS08155 (ACFE33_08155) aroB 1693440..1694555 (+) 1116 WP_380052130.1 3-dehydroquinate synthase -
  ACFE33_RS08160 (ACFE33_08160) ssb 1694616..1695113 (-) 498 WP_380052133.1 single-stranded DNA-binding protein Machinery gene
  ACFE33_RS08165 (ACFE33_08165) - 1695302..1695856 (+) 555 WP_380058685.1 lytic transglycosylase domain-containing protein -
  ACFE33_RS08170 (ACFE33_08170) - 1695858..1697933 (-) 2076 WP_380052136.1 dipeptide ABC transporter ATP-binding protein -
  ACFE33_RS08175 (ACFE33_08175) - 1697937..1699127 (-) 1191 WP_380052139.1 ABC transporter permease -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17753.31 Da        Isoelectric Point: 5.2733

>NTDB_id=1056215 ACFE33_RS08160 WP_380052133.1 1694616..1695113(-) (ssb) [Falsihalocynthiibacter sp. SS001]
MAGSVNKVILIGNLGRDPEVRNFQNGGKVCNLRIATSETWKDRNTGERREKTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKYQAQDGSDRYSTEVVLQGFNGVLTMLDGRNEGGSGGGGYSNDQSGGYSSGGGDFGGGSNQGGGNQGGHNDID
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1056215 ACFE33_RS08160 WP_380052133.1 1694616..1695113(-) (ssb) [Falsihalocynthiibacter sp. SS001]
ATGGCTGGATCGGTCAACAAAGTCATTCTCATCGGCAATTTGGGCCGTGATCCAGAGGTGCGTAATTTCCAAAATGGCGG
CAAAGTGTGCAACCTTCGCATTGCTACCAGCGAAACATGGAAGGACCGCAACACAGGCGAGCGCCGCGAGAAAACCGAGT
GGCACAGCGTTGCGATTTTCCAAGAAGGTCTGGTACGCATAGCCGAGCAGTACCTTCGCAAAGGGTCCAAAGTTTATATC
GAAGGACAACTTCAAACACGCAAGTATCAGGCGCAGGATGGCTCTGACCGCTATTCAACCGAAGTTGTTTTGCAAGGCTT
CAACGGCGTTCTGACCATGCTCGACGGACGGAACGAGGGCGGCAGCGGCGGCGGCGGATATAGCAACGACCAATCCGGCG
GCTACAGCTCTGGCGGCGGCGATTTTGGGGGCGGCAGCAACCAAGGTGGCGGAAATCAAGGCGGACACAACGATATCGAC
GACGAAATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.023

100

0.545
  ssb Glaesserella parasuis strain SC1401

46.032

100

0.527
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.491
  ssb Neisseria meningitidis MC58

43.333

100

0.473

Multiple sequence alignment