Detailed information    

insolico Bioinformatically predicted

Overview


Name   comE/blpR   Type   Regulator
Locus tag   ACLV65_RS08020 Genome accession   NZ_OZ217342
Coordinates   1613817..1614554 (-) Length   245 a.a.
NCBI ID   WP_301352169.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis B22     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 1608817..1619554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV65_RS07990 (SMIB22_15710) - 1609023..1609712 (-) 690 WP_411864991.1 CPBP family intramembrane glutamic endopeptidase -
  ACLV65_RS07995 (SMIB22_15720) - 1609764..1610147 (-) 384 WP_411864992.1 immunity protein -
  ACLV65_RS08000 (SMIB22_15730) - 1610769..1611173 (-) 405 WP_411864993.1 immunity protein -
  ACLV65_RS08005 (SMIB22_15740) - 1611170..1611334 (-) 165 WP_261063547.1 hypothetical protein -
  ACLV65_RS08010 (SMIB22_15750) - 1611632..1611751 (-) 120 WP_001829206.1 PncF family bacteriocin immunity protein -
  ACLV65_RS08015 (SMIB22_15770) - 1612454..1613803 (-) 1350 WP_411864994.1 sensor histidine kinase -
  ACLV65_RS08020 (SMIB22_15780) comE/blpR 1613817..1614554 (-) 738 WP_301352169.1 response regulator transcription factor Regulator
  ACLV65_RS08025 (SMIB22_15790) - 1614559..1614897 (-) 339 WP_000682127.1 LytTR family DNA-binding domain-containing protein -
  ACLV65_RS08030 (SMIB22_15800) - 1615174..1615503 (+) 330 WP_411864995.1 helicase BlpT -
  ACLV65_RS08035 (SMIB22_15810) pptB 1615566..1616615 (-) 1050 WP_411864996.1 ABC transporter permease Regulator
  ACLV65_RS08040 (SMIB22_15820) pptA 1616612..1617343 (-) 732 WP_411864997.1 ABC transporter ATP-binding protein Regulator
  ACLV65_RS08045 (SMIB22_15830) - 1617411..1617821 (+) 411 WP_411864998.1 HIT family protein -
  ACLV65_RS08050 (SMIB22_15840) - 1617831..1618118 (+) 288 WP_411864999.1 hypothetical protein -
  ACLV65_RS08055 (SMIB22_15850) dnaJ 1618408..1619544 (-) 1137 WP_411865000.1 molecular chaperone DnaJ -

Sequence


Protein


Download         Length: 245 a.a.        Molecular weight: 28720.96 Da        Isoelectric Point: 6.5886

>NTDB_id=1055897 ACLV65_RS08020 WP_301352169.1 1613817..1614554(-) (comE/blpR) [Streptococcus mitis isolate S. mitis B22]
MRIFVLEDDFSQQTRIETTIEKLLKEHHITPSSFEVFGKPAQLLAEVHEKGAHQLFFLDIEIRNEEMKGLEVARKIRDRD
PYALIVFVTTHSEFMPLSFRYQVSALDYIDKALSAEEFESRIETALLYANGQDSKSLAEDCFYFKSKFAQFQYPFKEVYY
LETSPRAHRVILYTKTDRLEFTASLEEILKQEPRLLQCHRSFLINPANVIHLDKKEKLLFFPNGGSCLIARYKVREVSEA
INKLH

Nucleotide


Download         Length: 738 bp        

>NTDB_id=1055897 ACLV65_RS08020 WP_301352169.1 1613817..1614554(-) (comE/blpR) [Streptococcus mitis isolate S. mitis B22]
ATGAGAATATTTGTTTTAGAAGATGATTTTTCCCAACAGACTAGAATTGAAACGACGATTGAGAAACTTTTGAAGGAACA
TCATATCACTCCGAGTTCTTTTGAAGTTTTTGGTAAGCCAGCTCAACTGCTGGCAGAGGTGCATGAGAAGGGAGCCCATC
AGCTATTCTTTTTGGACATTGAGATTCGAAATGAGGAGATGAAGGGTCTGGAAGTGGCTAGAAAGATTCGGGATCGGGAT
CCTTATGCCCTCATCGTCTTTGTGACGACTCACTCAGAGTTTATGCCCCTGTCTTTTCGCTACCAAGTGTCTGCTTTGGA
CTACATTGATAAGGCCTTGTCAGCAGAGGAGTTTGAATCTCGGATCGAGACAGCCCTCCTCTATGCCAATGGTCAAGACA
GTAAAAGTCTGGCGGAAGATTGCTTTTACTTTAAATCAAAATTTGCCCAATTCCAGTATCCTTTTAAAGAGGTTTATTAT
CTTGAAACATCGCCCAGAGCCCATCGTGTTATTCTCTATACCAAGACAGACAGACTGGAATTTACAGCGAGTTTAGAGGA
GATTCTCAAGCAGGAGCCTCGTCTCCTGCAGTGTCATCGCTCTTTTCTCATCAATCCAGCCAATGTGATACATTTGGATA
AGAAAGAAAAACTGCTTTTCTTTCCCAATGGTGGAAGTTGTCTAATCGCCCGTTATAAGGTCAGGGAAGTGTCTGAGGCC
ATCAATAAATTACACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

54.251

100

0.547

  comE/comE1 Streptococcus equinus JB1

43.038

96.735

0.416

  comE/comE2 Streptococcus equinus JB1

36.777

98.776

0.363


Multiple sequence alignment