Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACFDHS_RS00710 Genome accession   NZ_CP170235
Coordinates   116684..117190 (-) Length   168 a.a.
NCBI ID   WP_380572503.1    Uniprot ID   -
Organism   Staphylococcus hyicus strain SC362     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 111684..122190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDHS_RS00680 (ACFDHS_00680) bioB 112229..113221 (-) 993 WP_039647317.1 biotin synthase BioB -
  ACFDHS_RS00685 (ACFDHS_00685) chrA 113470..114627 (-) 1158 WP_380572500.1 chromate efflux transporter -
  ACFDHS_RS00690 (ACFDHS_00690) - 114639..114941 (-) 303 WP_039647322.1 PadR family transcriptional regulator -
  ACFDHS_RS00695 (ACFDHS_00695) - 115099..115476 (+) 378 WP_107633526.1 iron chaperone -
  ACFDHS_RS00700 (ACFDHS_00700) - 115553..116254 (-) 702 WP_107633527.1 CPBP family intramembrane glutamic endopeptidase -
  ACFDHS_RS00705 (ACFDHS_00705) rpsR 116394..116636 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  ACFDHS_RS00710 (ACFDHS_00710) ssbA 116684..117190 (-) 507 WP_380572503.1 single-stranded DNA-binding protein Machinery gene
  ACFDHS_RS00715 (ACFDHS_00715) rpsF 117214..117510 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  ACFDHS_RS00720 (ACFDHS_00720) - 117720..118355 (+) 636 WP_167693829.1 NAD(P)-dependent oxidoreductase -
  ACFDHS_RS00725 (ACFDHS_00725) ychF 119073..120170 (-) 1098 WP_380572505.1 redox-regulated ATPase YchF -
  ACFDHS_RS00730 (ACFDHS_00730) - 120177..120383 (-) 207 WP_039647334.1 DUF951 domain-containing protein -
  ACFDHS_RS00735 (ACFDHS_00735) - 120415..121305 (-) 891 WP_039647336.1 mechanosensitive ion channel family protein -
  ACFDHS_RS00740 (ACFDHS_00740) - 121329..122159 (-) 831 WP_039647339.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18764.32 Da        Isoelectric Point: 5.1957

>NTDB_id=1055730 ACFDHS_RS00710 WP_380572503.1 116684..117190(-) (ssbA) [Staphylococcus hyicus strain SC362]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEIVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQSFGGQQQGQNSSYQNNNNHSSNNDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1055730 ACFDHS_RS00710 WP_380572503.1 116684..117190(-) (ssbA) [Staphylococcus hyicus strain SC362]
ATGCTTAACAGAGTTGTATTAGTTGGTCGATTAACAAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGTGTTGC
GACTTTTACTTTAGCGGTAAATCGTACATTTACAAATAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAAAACGTGAGCAATTTCTTGTTCAAAGGTAGTCTCGCTGGCGTTGATGGTCGCTTACAATCACGC
AGTTACGAAAATCAAGAAGGCCGACGTGTCTATGTGACAGAAATTGTGTGTGACAGTGTTCAATTCCTTGAACCTAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAAGTTTCGGTGGACAACAACAAGGTC
AAAATTCATCATATCAAAACAACAACAATCATTCATCGAACAATGATAACCCATTTGCAAATGCAAATGGTCCTATCGAT
ATTAGTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.842

100

0.673
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.273

65.476

0.375
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.369

Multiple sequence alignment