Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACLV7Q_RS01150 Genome accession   NZ_OZ217341
Coordinates   216673..217593 (+) Length   306 a.a.
NCBI ID   WP_218757966.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis C22     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 211673..222593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Q_RS01130 (SMIC22_02160) yajC 212414..212713 (+) 300 WP_049540522.1 preprotein translocase subunit YajC -
  ACLV7Q_RS01135 (SMIC22_02170) - 212760..213203 (+) 444 WP_138700664.1 low molecular weight protein-tyrosine-phosphatase -
  ACLV7Q_RS01140 (SMIC22_02180) - 213190..213600 (+) 411 WP_218757964.1 MORN repeat-containing protein -
  ACLV7Q_RS01145 (SMIC22_02190) adhE 213899..216550 (+) 2652 WP_218757965.1 bifunctional acetaldehyde-CoA/alcohol dehydrogenase -
  ACLV7Q_RS01150 (SMIC22_02200) comR 216673..217593 (+) 921 WP_218757966.1 helix-turn-helix domain-containing protein Regulator
  ACLV7Q_RS01155 (SMIC22_02210) - 217909..218592 (+) 684 WP_218757967.1 ABC transporter ATP-binding protein -
  ACLV7Q_RS01160 (SMIC22_02220) - 218561..219862 (+) 1302 WP_218757968.1 ABC transporter permease -
  ACLV7Q_RS01165 (SMIC22_02230) gap 220039..221049 (+) 1011 WP_000260687.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ACLV7Q_RS01170 (SMIC22_02240) - 221117..221992 (-) 876 WP_411865976.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 36583.79 Da        Isoelectric Point: 4.4536

>NTDB_id=1055705 ACLV7Q_RS01150 WP_218757966.1 216673..217593(+) (comR) [Streptococcus mitis isolate S. mitis C22]
MNKINELGDKVRLLREEKGLSRPVFCGDESELSVRQLVRIEKGEFRPTIKTLEYIADRLEIPSYVLMPDYKELPKRYQEL
KYFLLHHPDYGDKELQEQKEEYFDEIFECFYDDLPRDEKMIVDCLQAIDEVRATDNEQYGIALLDESFEELWNQREFSFS
DLLKIRLYFLCSYLENIKKGQLSISEQQKLQLMFQKVCNNVENSGTDDLFLVRDVLFAGLGSCELLNDLELFKLAVEKLN
WISEKTRDFQKQPIVLMVEWKYYIHTDYDTAKQKYEEAKMMARMFGNEKLIVSLDKEWSEDLERYC

Nucleotide


Download         Length: 921 bp        

>NTDB_id=1055705 ACLV7Q_RS01150 WP_218757966.1 216673..217593(+) (comR) [Streptococcus mitis isolate S. mitis C22]
ATGAACAAGATAAATGAGTTAGGGGATAAAGTGCGACTTTTAAGAGAGGAGAAAGGACTTAGTCGTCCAGTTTTTTGCGG
GGATGAGTCTGAATTATCAGTCCGTCAGCTGGTGCGAATCGAAAAAGGAGAATTTCGACCGACTATAAAAACACTAGAAT
ATATTGCAGATAGATTAGAAATTCCATCCTATGTCTTGATGCCAGATTATAAGGAATTGCCTAAACGCTACCAAGAATTA
AAGTACTTTCTTTTACATCATCCTGACTATGGAGACAAAGAGTTACAGGAACAGAAGGAAGAATATTTTGATGAGATTTT
TGAGTGTTTTTATGATGACCTGCCCCGTGATGAGAAGATGATAGTGGACTGCCTTCAGGCAATAGATGAAGTGAGAGCGA
CGGATAATGAACAGTATGGAATAGCGCTTTTAGATGAATCTTTTGAGGAACTTTGGAACCAAAGAGAATTTTCCTTTTCA
GACCTTTTAAAAATTAGATTGTATTTTTTGTGTAGTTATTTAGAAAATATAAAAAAAGGACAGTTATCTATTAGCGAACA
GCAGAAACTTCAATTAATGTTTCAAAAAGTGTGTAATAACGTAGAAAATAGCGGTACAGACGATTTATTTCTTGTTCGTG
ATGTGTTATTTGCAGGGCTAGGAAGTTGTGAATTATTGAATGATTTAGAGTTATTTAAGTTAGCTGTGGAAAAACTGAAT
TGGATTTCTGAAAAAACACGAGATTTCCAAAAGCAACCGATTGTCTTGATGGTGGAGTGGAAATATTATATTCATACCGA
TTATGATACGGCAAAACAAAAGTATGAAGAAGCAAAAATGATGGCGAGGATGTTTGGCAATGAGAAGTTAATCGTTAGTC
TAGATAAGGAATGGAGCGAAGACTTAGAAAGGTATTGTTAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(74-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

38.047

97.059

0.369
  comR Streptococcus mutans UA159

37.209

98.366

0.366
  comR Streptococcus pyogenes MGAS8232

36.601

100

0.366
  comR Streptococcus suis D9

36.634

99.02

0.363