Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACFDAU_RS12685 Genome accession   NZ_CP170197
Coordinates   2568220..2569599 (-) Length   459 a.a.
NCBI ID   WP_413437261.1    Uniprot ID   -
Organism   Sulfuriferula sp. GW1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2563220..2574599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS12650 (ACFDAU_12650) bfr 2564139..2564603 (-) 465 WP_413437255.1 bacterioferritin -
  ACFDAU_RS12655 (ACFDAU_12655) - 2564627..2564851 (-) 225 WP_124704747.1 bacterioferritin-associated ferredoxin -
  ACFDAU_RS12660 (ACFDAU_12660) hemP 2564869..2565066 (-) 198 WP_413437256.1 hemin uptake protein HemP -
  ACFDAU_RS12665 (ACFDAU_12665) ampD 2565153..2565695 (-) 543 WP_413437257.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACFDAU_RS12670 (ACFDAU_12670) - 2565695..2566033 (-) 339 WP_413437258.1 thioredoxin family protein -
  ACFDAU_RS12675 (ACFDAU_12675) - 2566034..2567101 (-) 1068 WP_413437259.1 hypothetical protein -
  ACFDAU_RS12680 (ACFDAU_12680) - 2567205..2568206 (+) 1002 WP_413437260.1 sodium:calcium antiporter -
  ACFDAU_RS12685 (ACFDAU_12685) pilR 2568220..2569599 (-) 1380 WP_413437261.1 sigma-54-dependent transcriptional regulator Regulator
  ACFDAU_RS12690 (ACFDAU_12690) - 2569593..2571227 (-) 1635 WP_413437262.1 two-component system sensor histidine kinase NtrB -
  ACFDAU_RS12695 (ACFDAU_12695) - 2571228..2571452 (-) 225 WP_413437263.1 PP0621 family protein -
  ACFDAU_RS12705 (ACFDAU_12705) ispB 2571641..2572603 (-) 963 WP_124704754.1 octaprenyl diphosphate synthase -
  ACFDAU_RS12710 (ACFDAU_12710) rplU 2572734..2573045 (+) 312 WP_124704755.1 50S ribosomal protein L21 -
  ACFDAU_RS12715 (ACFDAU_12715) rpmA 2573057..2573317 (+) 261 WP_413437264.1 50S ribosomal protein L27 -
  ACFDAU_RS12720 (ACFDAU_12720) cgtA 2573387..2574466 (+) 1080 WP_413437265.1 Obg family GTPase CgtA -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50537.15 Da        Isoelectric Point: 5.2241

>NTDB_id=1055508 ACFDAU_RS12685 WP_413437261.1 2568220..2569599(-) (pilR) [Sulfuriferula sp. GW1]
MLKSKENYTGRSGQAPVLPVLIVDDEADILELLELTLLRMGLDVVRAMRVQEAIEKLKEGNFSLCLTDMRLPDGEGLEVV
RYIGEQRPEIPVAVITAHGNTENAVAALKAGAFDYINKPVTLEQLRALVKSALKLPERHAAPSASERALIGTSHAMQQAR
ELIEKLARTQAPVYITGESGSGKELAARLIHEQGVRADKAFVPVNCGAIPENLMESEFFGYKKGAFTGAEADRDGFFQAA
NGGTLFLDEVADLPLQMQVKLLRVIQEKKVRKVGSTLEEPVDVRVISATHQSLARCVEEGRFRQDLYYRLNVIELKMPPL
REMREDVAEIAGTLLARLAQAAGMAVPALDKEAGKALSQYDFPGNVRELENILERALALSGGGKIDAMDLQLTPAQEEGA
QEALQAGAKWPLQDYLDKLEREAIQEALEKTRYNKTAAAKLLGITFRALRYRLERLGIE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=1055508 ACFDAU_RS12685 WP_413437261.1 2568220..2569599(-) (pilR) [Sulfuriferula sp. GW1]
GTGTTAAAAAGCAAAGAAAATTACACGGGGCGCAGTGGGCAGGCACCTGTGCTGCCGGTACTTATTGTGGATGATGAGGC
GGATATCCTTGAGTTGCTGGAATTGACGCTGTTGCGCATGGGGCTGGATGTGGTGCGAGCCATGCGCGTGCAGGAAGCGA
TCGAGAAACTCAAGGAAGGGAATTTCAGCCTGTGCCTGACCGACATGCGCCTGCCCGATGGGGAAGGGCTGGAAGTGGTG
CGCTACATCGGCGAGCAGCGACCGGAAATCCCGGTCGCCGTGATCACGGCGCACGGCAATACTGAAAACGCGGTGGCCGC
TCTCAAGGCCGGTGCATTCGACTACATCAATAAACCGGTGACGCTGGAACAGTTGCGCGCTCTGGTCAAATCAGCCCTCA
AGCTACCTGAACGTCATGCAGCGCCGTCAGCTTCGGAACGTGCCTTGATCGGGACTTCTCACGCCATGCAGCAGGCGCGC
GAACTGATCGAAAAGCTGGCGCGCACCCAGGCGCCCGTGTATATCACCGGCGAATCCGGTAGTGGCAAGGAACTCGCCGC
ACGGCTCATCCATGAGCAGGGTGTGCGTGCGGACAAGGCATTCGTGCCGGTCAACTGCGGTGCGATTCCCGAGAACCTGA
TGGAATCGGAGTTTTTCGGTTACAAAAAAGGCGCTTTTACCGGTGCCGAAGCGGATCGCGACGGTTTTTTTCAGGCTGCC
AATGGGGGGACTCTGTTTCTCGACGAAGTGGCCGATTTGCCATTGCAAATGCAGGTCAAATTGCTGCGCGTGATACAGGA
AAAAAAAGTGCGCAAGGTCGGCAGTACATTGGAAGAACCTGTGGATGTGCGCGTCATCAGCGCCACCCACCAGAGTCTTG
CGCGCTGTGTGGAGGAAGGCCGTTTCCGTCAGGACTTGTACTATCGGTTGAATGTGATCGAGCTGAAAATGCCGCCGTTA
CGTGAAATGCGTGAAGATGTGGCGGAAATCGCCGGCACCTTGCTGGCACGCCTGGCGCAGGCGGCGGGCATGGCCGTACC
TGCGCTCGATAAAGAAGCCGGCAAAGCGCTGTCGCAATACGATTTCCCGGGTAACGTGCGGGAACTGGAGAACATTCTGG
AGCGTGCGCTGGCGCTGTCTGGTGGCGGCAAGATTGATGCGATGGATTTGCAACTCACCCCCGCACAGGAGGAGGGCGCG
CAGGAGGCATTGCAGGCAGGCGCGAAATGGCCATTGCAGGATTACCTGGACAAGCTTGAGCGCGAGGCCATTCAGGAAGC
GCTGGAAAAAACCCGTTATAACAAGACCGCTGCCGCCAAACTGCTGGGGATCACATTCCGCGCTTTGCGCTACCGGCTGG
AACGGCTGGGGATAGAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(416-455)

Response regulator receiver domain (Response_reg)

(20-129)

Sigma-54 interaction domain (Sigma54_activat)

(149-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

58.77

95.643

0.562
  pilR Acinetobacter baumannii strain A118

45.534

100

0.455
  luxO Vibrio cholerae strain A1552

37.584

97.386

0.366

Multiple sequence alignment