Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFDAU_RS03250 Genome accession   NZ_CP170197
Coordinates   644202..644669 (+) Length   155 a.a.
NCBI ID   WP_124705122.1    Uniprot ID   A0A401JFD3
Organism   Sulfuriferula sp. GW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 639202..649669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS03240 (ACFDAU_03240) uvrA 639860..642676 (-) 2817 WP_413438593.1 excinuclease ABC subunit UvrA -
  ACFDAU_RS03245 (ACFDAU_03245) - 642823..644202 (+) 1380 WP_413438594.1 MFS transporter -
  ACFDAU_RS03250 (ACFDAU_03250) ssb 644202..644669 (+) 468 WP_124705122.1 single-stranded DNA-binding protein Machinery gene
  ACFDAU_RS03255 (ACFDAU_03255) - 644669..646240 (+) 1572 WP_413438595.1 AMP-binding protein -
  ACFDAU_RS03260 (ACFDAU_03260) - 646306..648291 (+) 1986 WP_413438596.1 TonB-dependent receptor plug domain-containing protein -
  ACFDAU_RS03265 (ACFDAU_03265) - 648295..648942 (+) 648 WP_413438597.1 response regulator -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16947.78 Da        Isoelectric Point: 5.9697

>NTDB_id=1055498 ACFDAU_RS03250 WP_124705122.1 644202..644669(+) (ssb) [Sulfuriferula sp. GW1]
MASVNKVILVGNLGKDPEVRYAPSGDAIANVTLATTENWKDKNGEKQEKTEWHRVSFFGKTAEVVGQYLKKGSQVYVEGR
IQTRKWTDKEGQERYTTEIVADKMQMLGGRSGSASMDNDSGESRRPAAARPAPASNGPAKSSGSSFDDMEDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1055498 ACFDAU_RS03250 WP_124705122.1 644202..644669(+) (ssb) [Sulfuriferula sp. GW1]
ATGGCATCGGTCAATAAGGTAATTCTGGTAGGCAATCTGGGCAAGGACCCGGAGGTGCGCTATGCGCCGAGCGGCGACGC
CATCGCCAACGTAACCCTGGCGACGACTGAAAACTGGAAAGACAAAAACGGTGAGAAGCAGGAAAAAACCGAATGGCATC
GCGTTTCGTTTTTCGGAAAAACCGCCGAAGTGGTGGGCCAATATCTGAAAAAAGGCAGCCAGGTGTATGTGGAAGGCCGC
ATCCAGACCCGCAAGTGGACCGATAAGGAAGGCCAGGAACGCTACACCACCGAGATTGTGGCCGACAAAATGCAGATGTT
GGGTGGCCGCAGCGGCTCAGCCAGCATGGATAACGATAGCGGCGAGAGTCGTCGCCCCGCTGCTGCACGTCCAGCCCCTG
CATCGAATGGCCCGGCCAAATCCAGCGGCTCCAGCTTTGACGATATGGAAGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A401JFD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.581
  ssb Glaesserella parasuis strain SC1401

48.619

100

0.568
  ssb Neisseria meningitidis MC58

46.821

100

0.523
  ssb Neisseria gonorrhoeae MS11

46.821

100

0.523

Multiple sequence alignment