Detailed information NTG1055453

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LMH68_RS10700
• Genome accession: NZ_CP170175
• Coordinates: 2284027..2284896 (-)
• Length: 289 a.a.
• NCBI ID: WP_229647628.1
• Uniprot ID: -
• Organism: Vibrio sp. F13 strain 10N.222.55.B3
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2279027..2289896

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LMH68_RS10665 (LMH68_010665)	rpsP	2280045..2280293 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
LMH68_RS10670 (LMH68_010670)	rimM	2280318..2280872 (+)	555	WP_017063236.1	ribosome maturation factor RimM	-
LMH68_RS10675 (LMH68_010675)	trmD	2280899..2281639 (+)	741	WP_017061056.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
LMH68_RS10680 (LMH68_010680)	rplS	2281699..2282052 (+)	354	WP_004735514.1	50S ribosomal protein L19	-
LMH68_RS10685 (LMH68_010685)	yacG	2282364..2282561 (-)	198	WP_004735515.1	DNA gyrase inhibitor YacG	-
LMH68_RS10690 (LMH68_010690)	zapD	2282643..2283383 (-)	741	WP_017063237.1	cell division protein ZapD	-
LMH68_RS10695 (LMH68_010695)	coaE	2283410..2284024 (-)	615	WP_229647627.1	dephospho-CoA kinase	-
LMH68_RS10700 (LMH68_010700)	pilD	2284027..2284896 (-)	870	WP_229647628.1	prepilin peptidase	Machinery gene
LMH68_RS10705 (LMH68_010705)	pilC	2284964..2286193 (-)	1230	WP_017065898.1	type II secretion system F family protein	Machinery gene
LMH68_RS10710 (LMH68_010710)	pilB	2286209..2287894 (-)	1686	WP_229647629.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LMH68_RS10715 (LMH68_010715)	-	2287901..2288356 (-)	456	WP_229647630.1	pilin	-
LMH68_RS10720 (LMH68_010720)	nadC	2288610..2289500 (-)	891	WP_017065901.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32499.69 Da
• Isoelectric Point: 7.6347

>NTDB_id=1055453 LMH68_RS10700 WP_229647628.1 2284027..2284896(-) (pilD) [Vibrio sp. F13 strain 10N.222.55.B3]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRIV
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTAVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNIGPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1055453 LMH68_RS10700 WP_229647628.1 2284027..2284896(-) (pilD) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATTGGCAGCTTCCTCAA
CGTCGTCATACACCGTTTACCGATTATGATGGAACGAGAATGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCGCCAGAGGGGAAGTTTAATCTCAGTATTCCTCGTTCAACCTGCCCGAAATGCAAAACCCAATTAAGAATCGTC
GACAATATCCCAGTGTTAAGCTGGCTGTTCTTAAAGGGGAAGTGCCATAGCTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTAGTCGAACTGCTTACCGCAATCCTTTGTACCGCAGTCGCTAGTCATTTTGGTTTCAGTTATTACGCCATCGCTCTGA
TCTTTTTCACGTTTGCATTGATTACCGCAACCTTTATCGATCTCGATACCATGCTGCTCCCTGATCAAATCACCTTGCCT
TTGGTATGGTCCGGTATCGCATTAGCACTGTTTAATATCGGCCCAGTATCGCTGCAAGATTCCGTGGTTGGCGCAATGGC
TGGTTACCTCGCTTTATGGTCTGTTTATTGGTTGTTCAAACTGCTAACAGGTAAAGAAGGCATGGGTTACGGTGACTTCA
AACTCCTGGCTGCGCTTGGTGCATGGCTTGGTTGGCAACACCTACCGATGATCATCCTTTTATCTTCGCTGGTAGGCCTT
GTGTTTGGTTTAATTCAACTTCGCCTGAAACAGCAAGGCATCGATAAAGCCTTTCCATTTGGCCCTTACCTTGCAATTGC
GGGTTGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	68.056	99.654	0.678
pilD	Acinetobacter nosocomialis M2	50.936	92.388	0.471
pilD	Acinetobacter baumannii D1279779	50.562	92.388	0.467
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446