Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE38K_RS20275 Genome accession   NZ_CP170101
Coordinates   4150059..4150595 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli BL21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4145059..4155595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE38K_RS20255 aphA 4145347..4146060 (+) 714 WP_001395166.1 acid phosphatase AphA -
  ACE38K_RS20260 yjbQ 4146171..4146587 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ACE38K_RS20265 yjbR 4146591..4146947 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ACE38K_RS20270 uvrA 4146982..4149804 (-) 2823 WP_000357744.1 excinuclease ABC subunit UvrA -
  ACE38K_RS20275 ssb 4150059..4150595 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ACE38K_RS20280 yjcB 4150694..4150975 (-) 282 WP_001295689.1 YjcB family protein -
  ACE38K_RS20285 pdeC 4151405..4152991 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  ACE38K_RS20290 soxS 4152994..4153317 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ACE38K_RS20295 soxR 4153403..4153867 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=1055069 ACE38K_RS20275 WP_000168305.1 4150059..4150595(+) (ssb) [Escherichia coli BL21]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1055069 ACE38K_RS20275 WP_000168305.1 4150059..4150595(+) (ssb) [Escherichia coli BL21]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment