Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE4RL_RS11420 Genome accession   NZ_CP170082
Coordinates   2272571..2273077 (+) Length   168 a.a.
NCBI ID   WP_375597259.1    Uniprot ID   -
Organism   Devosia sp. Naph2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2267571..2278077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RL_RS11405 (ACE4RL_11405) - 2268091..2268768 (+) 678 WP_375597256.1 glutathione S-transferase family protein -
  ACE4RL_RS11410 (ACE4RL_11410) - 2268765..2269190 (+) 426 WP_375597257.1 DUF1489 family protein -
  ACE4RL_RS11415 (ACE4RL_11415) uvrA 2269257..2272151 (-) 2895 WP_375597258.1 excinuclease ABC subunit UvrA -
  ACE4RL_RS11420 (ACE4RL_11420) ssb 2272571..2273077 (+) 507 WP_375597259.1 single-stranded DNA-binding protein Machinery gene
  ACE4RL_RS11425 (ACE4RL_11425) - 2273120..2274397 (-) 1278 WP_375597260.1 diguanylate cyclase domain-containing protein -
  ACE4RL_RS11430 (ACE4RL_11430) - 2274508..2275035 (-) 528 WP_375597261.1 hypothetical protein -
  ACE4RL_RS11435 (ACE4RL_11435) - 2275213..2277591 (-) 2379 WP_375597262.1 RND family transporter -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17964.74 Da        Isoelectric Point: 5.9568

>NTDB_id=1054956 ACE4RL_RS11420 WP_375597259.1 2272571..2273077(+) (ssb) [Devosia sp. Naph2]
MAGSVNKVILVGNLGNDPEVRNLPSGGKVVNLSVATSERWRDRTSGEQREKTEWHRVVIFSEGLARVAEQYLKKGSKVYL
EGQLQTRKWQDQSGQDKYSTEVVLQNFNSSMVLLDGRGEGSGDSGGYGGGDGGFRGVRDNSGGGGGGRRPSANAPAFEPG
GMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=1054956 ACE4RL_RS11420 WP_375597259.1 2272571..2273077(+) (ssb) [Devosia sp. Naph2]
ATGGCTGGCAGTGTGAACAAGGTCATTCTGGTAGGCAATCTGGGCAATGACCCGGAAGTGCGGAATCTGCCGAGTGGCGG
CAAGGTGGTCAATCTGAGCGTGGCGACGTCAGAGCGCTGGCGGGATCGCACCAGCGGCGAGCAGCGCGAGAAAACCGAAT
GGCACCGCGTGGTGATCTTCTCGGAGGGCCTGGCGCGCGTCGCCGAGCAATATCTCAAGAAGGGCTCCAAGGTTTATCTC
GAGGGGCAGTTGCAGACCCGCAAGTGGCAGGATCAGTCCGGCCAGGACAAGTATTCCACCGAGGTGGTGCTGCAGAACTT
CAATTCGTCCATGGTGCTGCTCGACGGCCGCGGCGAAGGTTCAGGCGATAGCGGCGGCTATGGTGGTGGCGATGGCGGCT
TCCGTGGCGTGCGCGATAATTCCGGCGGTGGTGGCGGCGGTCGCCGTCCCTCGGCCAATGCGCCGGCTTTCGAGCCCGGC
GGCATGGATGATGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.579

100

0.583
  ssb Vibrio cholerae strain A1552

51.397

100

0.548
  ssb Neisseria meningitidis MC58

40.541

100

0.446
  ssb Neisseria gonorrhoeae MS11

40.541

100

0.446

Multiple sequence alignment