Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | BCT18_RS05675 | Genome accession | NZ_CP170034 |
| Coordinates | 1186782..1187336 (+) | Length | 184 a.a. |
| NCBI ID | WP_010434324.1 | Uniprot ID | A0A7Z1MML7 |
| Organism | Vibrio cyclitrophicus strain 10N.222.54.F11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 1187498..1206347 | 1186782..1187336 | flank | 162 |
Gene organization within MGE regions
Location: 1186782..1206347
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCT18_RS05675 (BCT18_05675) | ssb | 1186782..1187336 (+) | 555 | WP_010434324.1 | single-stranded DNA-binding protein | Machinery gene |
| BCT18_RS05680 (BCT18_05680) | csrD | 1187498..1189513 (+) | 2016 | WP_016767796.1 | RNase E specificity factor CsrD | - |
| BCT18_RS05685 (BCT18_05685) | - | 1189516..1190958 (+) | 1443 | WP_010434328.1 | MSHA biogenesis protein MshI | - |
| BCT18_RS05690 (BCT18_05690) | pilO | 1190958..1191605 (+) | 648 | WP_010434330.1 | type 4a pilus biogenesis protein PilO | - |
| BCT18_RS05695 (BCT18_05695) | - | 1191598..1191930 (+) | 333 | WP_016788320.1 | MSHA biogenesis protein MshK | - |
| BCT18_RS05700 (BCT18_05700) | mshL | 1191946..1193583 (+) | 1638 | WP_102277579.1 | pilus (MSHA type) biogenesis protein MshL | - |
| BCT18_RS05705 (BCT18_05705) | - | 1193637..1194476 (+) | 840 | WP_010434338.1 | ExeA family protein | - |
| BCT18_RS05710 (BCT18_05710) | - | 1194479..1195627 (+) | 1149 | WP_010434341.1 | tetratricopeptide repeat protein | - |
| BCT18_RS05715 (BCT18_05715) | - | 1195617..1197341 (+) | 1725 | WP_010434345.1 | GspE/PulE family protein | - |
| BCT18_RS05720 (BCT18_05720) | - | 1197354..1198577 (+) | 1224 | WP_016795710.1 | type II secretion system F family protein | - |
| BCT18_RS05725 (BCT18_05725) | - | 1198581..1199036 (+) | 456 | WP_016790950.1 | hypothetical protein | - |
| BCT18_RS05730 (BCT18_05730) | - | 1199116..1199691 (+) | 576 | WP_010434354.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCT18_RS05735 (BCT18_05735) | - | 1199727..1200203 (+) | 477 | WP_102277580.1 | type II secretion system protein | - |
| BCT18_RS05740 (BCT18_05740) | - | 1200345..1200845 (+) | 501 | WP_102277581.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCT18_RS05745 (BCT18_05745) | - | 1200835..1201440 (+) | 606 | WP_016794286.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCT18_RS05750 (BCT18_05750) | - | 1201440..1202207 (+) | 768 | WP_016795709.1 | PilW family protein | - |
| BCT18_RS05755 (BCT18_05755) | - | 1202179..1202604 (+) | 426 | WP_016788312.1 | hypothetical protein | - |
| BCT18_RS05760 (BCT18_05760) | - | 1202621..1205836 (+) | 3216 | WP_412495410.1 | DUF6701 domain-containing protein | - |
| BCT18_RS05765 (BCT18_05765) | - | 1205817..1206347 (+) | 531 | WP_412495402.1 | DUF6701 domain-containing protein | - |
Sequence
Protein
Download Length: 184 a.a. Molecular weight: 20286.42 Da Isoelectric Point: 5.2358
>NTDB_id=1054886 BCT18_RS05675 WP_010434324.1 1186782..1187336(+) (ssb) [Vibrio cyclitrophicus strain 10N.222.54.F11]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF
Nucleotide
Download Length: 555 bp
>NTDB_id=1054886 BCT18_RS05675 WP_010434324.1 1186782..1187336(+) (ssb) [Vibrio cyclitrophicus strain 10N.222.54.F11]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
81.72 |
100 |
0.826 |
| ssb | Glaesserella parasuis strain SC1401 |
57.219 |
100 |
0.582 |
| ssb | Neisseria meningitidis MC58 |
47.826 |
100 |
0.478 |
| ssb | Neisseria gonorrhoeae MS11 |
47.826 |
100 |
0.478 |