Detailed information NTG1054762

Bioinformatically predicted

Overview

• Name: qstR
• Type: Regulator
• Locus tag: BCU19_RS14940
• Genome accession: NZ_CP170025
• Coordinates: 3324625..3325272 (+)
• Length: 215 a.a.
• NCBI ID: WP_016767798.1
• Uniprot ID: A0AAN0LZQ5
• Organism: Vibrio cyclitrophicus strain 10N.261.55.E6
• Function: promote expression of competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	3307882..3323653	3324625..3325272	flank	972

Gene organization within MGE regions

Location: 3307882..3325272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU19_RS14875 (BCU19_14875)	-	3309728..3310522 (+)	795	WP_102385418.1	hypothetical protein	-
BCU19_RS14880 (BCU19_14880)	-	3310538..3310735 (+)	198	WP_050053088.1	hypothetical protein	-
BCU19_RS14885 (BCU19_14885)	-	3310883..3311320 (+)	438	WP_102385417.1	hypothetical protein	-
BCU19_RS14890 (BCU19_14890)	-	3311490..3311711 (+)	222	WP_102385416.1	helix-turn-helix domain-containing protein	-
BCU19_RS14895 (BCU19_14895)	-	3311733..3311948 (+)	216	WP_050053085.1	hypothetical protein	-
BCU19_RS14900 (BCU19_14900)	-	3312379..3315144 (-)	2766	WP_102385415.1	AAA family ATPase	-
BCU19_RS14905 (BCU19_14905)	-	3315500..3317689 (-)	2190	WP_102385414.1	ATP-dependent DNA helicase	-
BCU19_RS14910 (BCU19_14910)	-	3317686..3318129 (-)	444	WP_050052718.1	VPA1267 family protein	-
BCU19_RS14915 (BCU19_14915)	-	3318132..3318578 (-)	447	WP_050052719.1	hypothetical protein	-
BCU19_RS14920 (BCU19_14920)	-	3318578..3320707 (-)	2130	WP_102385413.1	integrase	-
BCU19_RS14925 (BCU19_14925)	-	3320710..3322281 (-)	1572	WP_197087053.1	site-specific integrase	-
BCU19_RS14930 (BCU19_14930)	-	3322281..3323609 (-)	1329	WP_050052720.1	site-specific integrase	-
BCU19_RS14935 (BCU19_14935)	ssb	3323792..3324346 (-)	555	WP_010434324.1	single-stranded DNA-binding protein	Machinery gene
BCU19_RS14940 (BCU19_14940)	qstR	3324625..3325272 (+)	648	WP_016767798.1	LuxR C-terminal-related transcriptional regulator	Regulator

Sequence

Protein

• Length: 215 a.a.
• Molecular weight: 25029.27 Da
• Isoelectric Point: 9.9854

>NTDB_id=1054762 BCU19_RS14940 WP_016767798.1 3324625..3325272(+) (qstR) [Vibrio cyclitrophicus strain 10N.261.55.E6]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide

• Length: 648 bp

>NTDB_id=1054762 BCU19_RS14940 WP_016767798.1 3324625..3325272(+) (qstR) [Vibrio cyclitrophicus strain 10N.261.55.E6]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, luxR family (GerE) (155-209)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
qstR	Vibrio campbellii strain DS40M4	54.419	100	0.544
qstR	Vibrio parahaemolyticus RIMD 2210633	53.023	100	0.53
qstR	Vibrio cholerae strain A1552	49.065	99.535	0.488