Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BCU19_RS14935 Genome accession   NZ_CP170025
Coordinates   3323792..3324346 (-) Length   184 a.a.
NCBI ID   WP_010434324.1    Uniprot ID   A0A7Z1MML7
Organism   Vibrio cyclitrophicus strain 10N.261.55.E6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3307882..3323653 3323792..3324346 flank 139


Gene organization within MGE regions


Location: 3307882..3324346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU19_RS14875 (BCU19_14875) - 3309728..3310522 (+) 795 WP_102385418.1 hypothetical protein -
  BCU19_RS14880 (BCU19_14880) - 3310538..3310735 (+) 198 WP_050053088.1 hypothetical protein -
  BCU19_RS14885 (BCU19_14885) - 3310883..3311320 (+) 438 WP_102385417.1 hypothetical protein -
  BCU19_RS14890 (BCU19_14890) - 3311490..3311711 (+) 222 WP_102385416.1 helix-turn-helix domain-containing protein -
  BCU19_RS14895 (BCU19_14895) - 3311733..3311948 (+) 216 WP_050053085.1 hypothetical protein -
  BCU19_RS14900 (BCU19_14900) - 3312379..3315144 (-) 2766 WP_102385415.1 AAA family ATPase -
  BCU19_RS14905 (BCU19_14905) - 3315500..3317689 (-) 2190 WP_102385414.1 ATP-dependent DNA helicase -
  BCU19_RS14910 (BCU19_14910) - 3317686..3318129 (-) 444 WP_050052718.1 VPA1267 family protein -
  BCU19_RS14915 (BCU19_14915) - 3318132..3318578 (-) 447 WP_050052719.1 hypothetical protein -
  BCU19_RS14920 (BCU19_14920) - 3318578..3320707 (-) 2130 WP_102385413.1 integrase -
  BCU19_RS14925 (BCU19_14925) - 3320710..3322281 (-) 1572 WP_197087053.1 site-specific integrase -
  BCU19_RS14930 (BCU19_14930) - 3322281..3323609 (-) 1329 WP_050052720.1 site-specific integrase -
  BCU19_RS14935 (BCU19_14935) ssb 3323792..3324346 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20286.42 Da        Isoelectric Point: 5.2358

>NTDB_id=1054761 BCU19_RS14935 WP_010434324.1 3323792..3324346(-) (ssb) [Vibrio cyclitrophicus strain 10N.261.55.E6]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1054761 BCU19_RS14935 WP_010434324.1 3323792..3324346(-) (ssb) [Vibrio cyclitrophicus strain 10N.261.55.E6]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCGAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1MML7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.826
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.582
  ssb Neisseria meningitidis MC58

47.826

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478

Multiple sequence alignment