Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BCU28_RS15525 | Genome accession | NZ_CP170022 |
| Coordinates | 3422914..3423543 (-) | Length | 209 a.a. |
| NCBI ID | WP_010435284.1 | Uniprot ID | A0AAN0LMD0 |
| Organism | Vibrio cyclitrophicus strain 10N.286.45.B7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3417914..3428543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCU28_RS15505 (BCU28_15505) | aroB | 3418850..3419938 (-) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
| BCU28_RS15510 (BCU28_15510) | aroK | 3419963..3420481 (-) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCU28_RS15515 (BCU28_15515) | pilQ | 3420658..3422349 (-) | 1692 | WP_016787694.1 | type IV pilus secretin PilQ | Machinery gene |
| BCU28_RS15520 (BCU28_15520) | pilP | 3422409..3422927 (-) | 519 | WP_016787693.1 | pilus assembly protein PilP | Machinery gene |
| BCU28_RS15525 (BCU28_15525) | pilO | 3422914..3423543 (-) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCU28_RS15530 (BCU28_15530) | pilN | 3423536..3424150 (-) | 615 | WP_010435288.1 | PilN domain-containing protein | Machinery gene |
| BCU28_RS15535 (BCU28_15535) | pilM | 3424134..3425159 (-) | 1026 | WP_016790839.1 | type IV pilus assembly protein PilM | Machinery gene |
| BCU28_RS15540 (BCU28_15540) | - | 3425311..3427869 (+) | 2559 | WP_010435294.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24324.99 Da Isoelectric Point: 4.9074
>NTDB_id=1054713 BCU28_RS15525 WP_010435284.1 3422914..3423543(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.45.B7]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1054713 BCU28_RS15525 WP_010435284.1 3422914..3423543(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.45.B7]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTATCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTATCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
92.344 |
0.708 |
| pilO | Vibrio campbellii strain DS40M4 |
74.054 |
88.517 |
0.656 |