Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BCU92_RS06720 Genome accession   NZ_CP170017
Coordinates   1478077..1478634 (-) Length   185 a.a.
NCBI ID   WP_412494845.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain 10N.286.52.C10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1463046..1477915 1478077..1478634 flank 162


Gene organization within MGE regions


Location: 1463046..1478634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCU92_RS06640 (BCU92_06640) - 1463046..1463498 (-) 453 WP_102291966.1 MSHA biogenesis protein MshP -
  BCU92_RS06645 (BCU92_06645) - 1463488..1464210 (-) 723 WP_102291967.1 PilW family protein -
  BCU92_RS06650 (BCU92_06650) - 1464210..1464572 (-) 363 WP_016796061.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCU92_RS06655 (BCU92_06655) - 1464569..1465066 (-) 498 WP_102270426.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCU92_RS06660 (BCU92_06660) - 1465219..1465686 (-) 468 WP_102270427.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCU92_RS06665 (BCU92_06665) - 1465722..1466297 (-) 576 WP_010434354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCU92_RS06670 (BCU92_06670) - 1466377..1466832 (-) 456 WP_016788317.1 hypothetical protein -
  BCU92_RS06675 (BCU92_06675) - 1466836..1468059 (-) 1224 WP_010434347.1 type II secretion system F family protein -
  BCU92_RS06680 (BCU92_06680) - 1468072..1469796 (-) 1725 WP_010434345.1 GspE/PulE family protein -
  BCU92_RS06685 (BCU92_06685) - 1469786..1470934 (-) 1149 WP_102291968.1 tetratricopeptide repeat protein -
  BCU92_RS06690 (BCU92_06690) - 1470937..1471776 (-) 840 WP_010434338.1 ExeA family protein -
  BCU92_RS06695 (BCU92_06695) mshL 1471830..1473467 (-) 1638 WP_016789728.1 pilus (MSHA type) biogenesis protein MshL -
  BCU92_RS06700 (BCU92_06700) - 1473483..1473815 (-) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  BCU92_RS06705 (BCU92_06705) pilO 1473808..1474455 (-) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  BCU92_RS06710 (BCU92_06710) - 1474455..1475897 (-) 1443 WP_102291969.1 MSHA biogenesis protein MshI -
  BCU92_RS06715 (BCU92_06715) csrD 1475900..1477915 (-) 2016 WP_407834172.1 RNase E specificity factor CsrD -
  BCU92_RS06720 (BCU92_06720) ssb 1478077..1478634 (-) 558 WP_412494845.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20430.55 Da        Isoelectric Point: 5.2358

>NTDB_id=1054593 BCU92_RS06720 WP_412494845.1 1478077..1478634(-) (ssb) [Vibrio cyclitrophicus strain 10N.286.52.C10]
MSRGSVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQQYSAPAQQQPKA
PQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=1054593 BCU92_RS06720 WP_412494845.1 1478077..1478634(-) (ssb) [Vibrio cyclitrophicus strain 10N.286.52.C10]
ATGAGTAGAGGTTCAGTTAATAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCA
CCTCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.645

100

0.811
  ssb Glaesserella parasuis strain SC1401

55.914

100

0.562
  ssb Neisseria meningitidis MC58

47.312

100

0.476
  ssb Neisseria gonorrhoeae MS11

47.312

100

0.476

Multiple sequence alignment