Detailed information NTG1054565

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BCU99_RS12695
• Genome accession: NZ_CP170015
• Coordinates: 2867527..2868396 (+)
• Length: 289 a.a.
• NCBI ID: WP_016793488.1
• Uniprot ID: -
• Organism: Vibrio cyclitrophicus strain 10N.286.52.F6
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2862527..2873396

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCU99_RS12675 (BCU99_12675)	nadC	2862916..2863806 (+)	891	WP_016768207.1	carboxylating nicotinate-nucleotide diphosphorylase	-
BCU99_RS12680 (BCU99_12680)	-	2864058..2864531 (+)	474	WP_016768206.1	pilin	-
BCU99_RS12685 (BCU99_12685)	pilB	2864531..2866216 (+)	1686	WP_016768205.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BCU99_RS12690 (BCU99_12690)	pilC	2866231..2867460 (+)	1230	WP_016793487.1	type II secretion system F family protein	Machinery gene
BCU99_RS12695 (BCU99_12695)	pilD	2867527..2868396 (+)	870	WP_016793488.1	prepilin peptidase	Machinery gene
BCU99_RS12700 (BCU99_12700)	coaE	2868399..2869013 (+)	615	WP_065099652.1	dephospho-CoA kinase	-
BCU99_RS12705 (BCU99_12705)	zapD	2869040..2869780 (+)	741	WP_010435917.1	cell division protein ZapD	-
BCU99_RS12710 (BCU99_12710)	yacG	2869862..2870059 (+)	198	WP_010435916.1	DNA gyrase inhibitor YacG	-
BCU99_RS12715 (BCU99_12715)	rplS	2870320..2870673 (-)	354	WP_004735514.1	50S ribosomal protein L19	-
BCU99_RS12720 (BCU99_12720)	trmD	2870733..2871473 (-)	741	WP_010435912.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
BCU99_RS12725 (BCU99_12725)	rimM	2871500..2872054 (-)	555	WP_016768202.1	ribosome maturation factor RimM	-
BCU99_RS12730 (BCU99_12730)	rpsP	2872079..2872327 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32557.77 Da
• Isoelectric Point: 7.6347

>NTDB_id=1054565 BCU99_RS12695 WP_016793488.1 2867527..2868396(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.52.F6]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRVI
DNIPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=1054565 BCU99_RS12695 WP_016793488.1 2867527..2868396(+) (pilD) [Vibrio cyclitrophicus strain 10N.286.52.F6]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATCGGTAGTTTTCTCAA
CGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TTCCAGCACCAGAGGGGAAGTTTAACCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTAAGAGTAATC
GACAACATCCCGGTATTAAGCTGGTTATTCCTAAAGGGCAAGTGCCACAGTTGTGCTAACCCAATCAGTGCTCGCTACCC
TTTGGTCGAACTGCTTACGGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCGCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTATTGCCAGATCAAATCACCTTGCCT
TTAGTTTGGTCTGGTATCGCTTTAGCACTGTTTAATATCAGCCCGGTATCGCTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTATCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGATAAAGCCTTTCCGTTTGGCCCCTACCTTGCGATTGC
GGGATGGGTAAGCTTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.048	100	0.74
pilD	Vibrio cholerae strain A1552	69.444	99.654	0.692
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	48.649	89.619	0.436