Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BCV31_RS10720 Genome accession   NZ_CP169999
Coordinates   2388364..2388918 (+) Length   184 a.a.
NCBI ID   WP_010434324.1    Uniprot ID   A0A7Z1MML7
Organism   Vibrio cyclitrophicus strain 10N.286.55.C10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2389080..2407949 2388364..2388918 flank 162


Gene organization within MGE regions


Location: 2388364..2407949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCV31_RS10720 (BCV31_10720) ssb 2388364..2388918 (+) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  BCV31_RS10725 (BCV31_10725) csrD 2389080..2391095 (+) 2016 WP_016796768.1 RNase E specificity factor CsrD -
  BCV31_RS10730 (BCV31_10730) - 2391098..2392540 (+) 1443 WP_102315802.1 MSHA biogenesis protein MshI -
  BCV31_RS10735 (BCV31_10735) pilO 2392540..2393187 (+) 648 WP_010434330.1 type 4a pilus biogenesis protein PilO -
  BCV31_RS10740 (BCV31_10740) - 2393180..2393512 (+) 333 WP_016788320.1 MSHA biogenesis protein MshK -
  BCV31_RS10745 (BCV31_10745) mshL 2393528..2395165 (+) 1638 WP_016789728.1 pilus (MSHA type) biogenesis protein MshL -
  BCV31_RS10750 (BCV31_10750) - 2395219..2396058 (+) 840 WP_016789727.1 ExeA family protein -
  BCV31_RS10755 (BCV31_10755) - 2396061..2397209 (+) 1149 WP_016796064.1 tetratricopeptide repeat protein -
  BCV31_RS10760 (BCV31_10760) - 2397199..2398923 (+) 1725 WP_010434345.1 GspE/PulE family protein -
  BCV31_RS10765 (BCV31_10765) - 2398936..2400159 (+) 1224 WP_010434347.1 type II secretion system F family protein -
  BCV31_RS10770 (BCV31_10770) - 2400163..2400618 (+) 456 WP_010434350.1 hypothetical protein -
  BCV31_RS10775 (BCV31_10775) - 2400698..2401273 (+) 576 WP_010434354.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCV31_RS10780 (BCV31_10780) - 2401309..2401803 (+) 495 WP_102350454.1 type II secretion system protein -
  BCV31_RS10785 (BCV31_10785) - 2401948..2402448 (+) 501 WP_102350453.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCV31_RS10790 (BCV31_10790) - 2402438..2403043 (+) 606 WP_016794286.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BCV31_RS10795 (BCV31_10795) - 2403043..2403810 (+) 768 WP_102350452.1 PilW family protein -
  BCV31_RS10800 (BCV31_10800) - 2403782..2404207 (+) 426 WP_016788312.1 hypothetical protein -
  BCV31_RS10805 (BCV31_10805) - 2404197..2407949 (+) 3753 WP_102350451.1 DUF6701 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20286.42 Da        Isoelectric Point: 5.2358

>NTDB_id=1054255 BCV31_RS10720 WP_010434324.1 2388364..2388918(+) (ssb) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=1054255 BCV31_RS10720 WP_010434324.1 2388364..2388918(+) (ssb) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1MML7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.72

100

0.826
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.582
  ssb Neisseria meningitidis MC58

47.826

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.826

100

0.478

Multiple sequence alignment