Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | BCV31_RS10715 | Genome accession | NZ_CP169999 |
| Coordinates | 2387438..2388085 (-) | Length | 215 a.a. |
| NCBI ID | WP_016767798.1 | Uniprot ID | A0AAN0LZQ5 |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.C10 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2389080..2407949 | 2387438..2388085 | flank | 995 |
Gene organization within MGE regions
Location: 2387438..2407949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV31_RS10715 (BCV31_10715) | qstR | 2387438..2388085 (-) | 648 | WP_016767798.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| BCV31_RS10720 (BCV31_10720) | ssb | 2388364..2388918 (+) | 555 | WP_010434324.1 | single-stranded DNA-binding protein | Machinery gene |
| BCV31_RS10725 (BCV31_10725) | csrD | 2389080..2391095 (+) | 2016 | WP_016796768.1 | RNase E specificity factor CsrD | - |
| BCV31_RS10730 (BCV31_10730) | - | 2391098..2392540 (+) | 1443 | WP_102315802.1 | MSHA biogenesis protein MshI | - |
| BCV31_RS10735 (BCV31_10735) | pilO | 2392540..2393187 (+) | 648 | WP_010434330.1 | type 4a pilus biogenesis protein PilO | - |
| BCV31_RS10740 (BCV31_10740) | - | 2393180..2393512 (+) | 333 | WP_016788320.1 | MSHA biogenesis protein MshK | - |
| BCV31_RS10745 (BCV31_10745) | mshL | 2393528..2395165 (+) | 1638 | WP_016789728.1 | pilus (MSHA type) biogenesis protein MshL | - |
| BCV31_RS10750 (BCV31_10750) | - | 2395219..2396058 (+) | 840 | WP_016789727.1 | ExeA family protein | - |
| BCV31_RS10755 (BCV31_10755) | - | 2396061..2397209 (+) | 1149 | WP_016796064.1 | tetratricopeptide repeat protein | - |
| BCV31_RS10760 (BCV31_10760) | - | 2397199..2398923 (+) | 1725 | WP_010434345.1 | GspE/PulE family protein | - |
| BCV31_RS10765 (BCV31_10765) | - | 2398936..2400159 (+) | 1224 | WP_010434347.1 | type II secretion system F family protein | - |
| BCV31_RS10770 (BCV31_10770) | - | 2400163..2400618 (+) | 456 | WP_010434350.1 | hypothetical protein | - |
| BCV31_RS10775 (BCV31_10775) | - | 2400698..2401273 (+) | 576 | WP_010434354.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCV31_RS10780 (BCV31_10780) | - | 2401309..2401803 (+) | 495 | WP_102350454.1 | type II secretion system protein | - |
| BCV31_RS10785 (BCV31_10785) | - | 2401948..2402448 (+) | 501 | WP_102350453.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCV31_RS10790 (BCV31_10790) | - | 2402438..2403043 (+) | 606 | WP_016794286.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| BCV31_RS10795 (BCV31_10795) | - | 2403043..2403810 (+) | 768 | WP_102350452.1 | PilW family protein | - |
| BCV31_RS10800 (BCV31_10800) | - | 2403782..2404207 (+) | 426 | WP_016788312.1 | hypothetical protein | - |
| BCV31_RS10805 (BCV31_10805) | - | 2404197..2407949 (+) | 3753 | WP_102350451.1 | DUF6701 domain-containing protein | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25029.27 Da Isoelectric Point: 9.9854
>NTDB_id=1054254 BCV31_RS10715 WP_016767798.1 2387438..2388085(-) (qstR) [Vibrio cyclitrophicus strain 10N.286.55.C10]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
Nucleotide
Download Length: 648 bp
>NTDB_id=1054254 BCV31_RS10715 WP_016767798.1 2387438..2388085(-) (qstR) [Vibrio cyclitrophicus strain 10N.286.55.C10]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
54.419 |
100 |
0.544 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
53.023 |
100 |
0.53 |
| qstR | Vibrio cholerae strain A1552 |
49.065 |
99.535 |
0.488 |