Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BCV36_RS12220 | Genome accession | NZ_CP169997 |
| Coordinates | 2747050..2747661 (-) | Length | 203 a.a. |
| NCBI ID | WP_065100850.1 | Uniprot ID | - |
| Organism | Vibrio cyclitrophicus strain 10N.286.55.C4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2742050..2752661
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BCV36_RS12200 (BCV36_12200) | aroB | 2742986..2744074 (-) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
| BCV36_RS12205 (BCV36_12205) | aroK | 2744099..2744617 (-) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| BCV36_RS12210 (BCV36_12210) | pilQ | 2744794..2746485 (-) | 1692 | WP_016787694.1 | type IV pilus secretin PilQ | Machinery gene |
| BCV36_RS12215 (BCV36_12215) | pilP | 2746545..2747063 (-) | 519 | WP_016787693.1 | pilus assembly protein PilP | Machinery gene |
| BCV36_RS12220 (BCV36_12220) | pilO | 2747050..2747661 (-) | 612 | WP_065100850.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BCV36_RS12225 (BCV36_12225) | pilN | 2747654..2748268 (-) | 615 | WP_010435288.1 | PilN domain-containing protein | Machinery gene |
| BCV36_RS12230 (BCV36_12230) | pilM | 2748252..2749277 (-) | 1026 | WP_016787692.1 | type IV pilus assembly protein PilM | Machinery gene |
| BCV36_RS12235 (BCV36_12235) | - | 2749429..2751987 (+) | 2559 | WP_010435294.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 23540.12 Da Isoelectric Point: 4.7672
>NTDB_id=1054206 BCV36_RS12220 WP_065100850.1 2747050..2747661(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MANLQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKVAALPKL
QSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGDFSAAIA
KLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 612 bp
>NTDB_id=1054206 BCV36_RS12220 WP_065100850.1 2747050..2747661(-) (pilO) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGGCTAACCTTCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATGGCCGTTACTGCCTCAATT
ACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGCCTTTGGACGATGAGCTAC
AGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTTGCAGCCTTGCCTAAGTTG
CAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCAAAAGGAGCTGGCCAGCAT
GTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGGGGCAGAAGCAAAACAAAG
CGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTACCATGAGATTGGTGATTTCTCGGCGGCCATCGCT
AAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAGCACGCTGCACTTTAGGGT
TCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATGGCCGTTACTGCCTCAATT
ACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGCCTTTGGACGATGAGCTAC
AGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTTGCAGCCTTGCCTAAGTTG
CAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCAAAAGGAGCTGGCCAGCAT
GTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGGGGCAGAAGCAAAACAAAG
CGTTTCTGTATCGGTTACCTCTCAATATCGAGTTGACGGGTGACTACCATGAGATTGGTGATTTCTCGGCGGCCATCGCT
AAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAGCACGCTGCACTTTAGGGT
TCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
95.074 |
0.729 |
| pilO | Vibrio campbellii strain DS40M4 |
74.054 |
91.133 |
0.675 |