Detailed information NTG1054208

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: BCV36_RS12230
• Genome accession: NZ_CP169997
• Coordinates: 2748252..2749277 (-)
• Length: 341 a.a.
• NCBI ID: WP_016787692.1
• Uniprot ID: A0AAN0LM26
• Organism: Vibrio cyclitrophicus strain 10N.286.55.C4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2743252..2754277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BCV36_RS12205 (BCV36_12205)	aroK	2744099..2744617 (-)	519	WP_009848907.1	shikimate kinase AroK	-
BCV36_RS12210 (BCV36_12210)	pilQ	2744794..2746485 (-)	1692	WP_016787694.1	type IV pilus secretin PilQ	Machinery gene
BCV36_RS12215 (BCV36_12215)	pilP	2746545..2747063 (-)	519	WP_016787693.1	pilus assembly protein PilP	Machinery gene
BCV36_RS12220 (BCV36_12220)	pilO	2747050..2747661 (-)	612	WP_065100850.1	type 4a pilus biogenesis protein PilO	Machinery gene
BCV36_RS12225 (BCV36_12225)	pilN	2747654..2748268 (-)	615	WP_010435288.1	PilN domain-containing protein	Machinery gene
BCV36_RS12230 (BCV36_12230)	pilM	2748252..2749277 (-)	1026	WP_016787692.1	type IV pilus assembly protein PilM	Machinery gene
BCV36_RS12235 (BCV36_12235)	-	2749429..2751987 (+)	2559	WP_010435294.1	penicillin-binding protein 1A	-
BCV36_RS12240 (BCV36_12240)	oxyR	2752083..2752976 (-)	894	WP_010435297.1	DNA-binding transcriptional regulator OxyR	-
BCV36_RS12245 (BCV36_12245)	-	2753198..2753926 (+)	729	WP_010435300.1	glutathione peroxidase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38128.77 Da
• Isoelectric Point: 6.8348

>NTDB_id=1054208 BCV36_RS12230 WP_016787692.1 2748252..2749277(-) (pilM) [Vibrio cyclitrophicus strain 10N.286.55.C4]
MGSSLITGIDINHHSIKAVVLKPVGESYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKGLPFGSRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVDSRADALTKAGFKP
IVVDTQAHGLLNIWQLASHLYPEKKNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGIQDLCSTGNSMDMEGGFSNVEEKH
KFIVNLIEKLKRQLQLYSSVNALQPISGIWLMGEGASMPMVVEELERHFQLSCESLNPLSLFENKVAKKRRLPMDWQHFG
IAAGMAMSGLKWQGEKHVASN

Nucleotide

• Length: 1026 bp

>NTDB_id=1054208 BCV36_RS12230 WP_016787692.1 2748252..2749277(-) (pilM) [Vibrio cyclitrophicus strain 10N.286.55.C4]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCACCACAGCATCAAAGCCGTGGTACTAAAACCCGTTGGGGAGTC
GTATGCCCTGGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTTTGGAGTATCAGAAAA
CTGTTAAGAAACTCAAAGAACTTAGGAAAGGGCTGCCTTTTGGAAGCCGCAACGTCGCTATTTCGGTACCGGATAACACG
GTGATCAGCAAAGTACTGCAAATAGAGAGCGAATTAGAAGATAGAGAAAAGGAGTTCTCGATCTATCAAACCTTTGCTCA
TCAATCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTAGAAGACAAACGATTTGGTAAAGGATCAACAA
GCAGCTATCAAGTGTATGCGACTCGTAAAGAGGTGGTTGATAGCCGAGCTGACGCGCTAACGAAAGCAGGGTTTAAGCCC
ATCGTTGTCGACACTCAGGCCCATGGTTTACTCAACATTTGGCAATTGGCTTCGCATTTGTATCCAGAAAAAAAGAATTG
GCTGTTGGTGGATGTTGGCGTTGATCAAACTTCATTAGGCATTATTCCCCAAGGTTCAGCGCCATTTTATAAAGATATTG
CCTTTGGCATTCAAGATCTTTGCAGTACGGGTAACTCGATGGATATGGAGGGTGGGTTTAGTAACGTTGAGGAGAAGCAT
AAGTTTATTGTCAATTTGATTGAAAAACTCAAGCGTCAGTTACAGCTCTATTCATCGGTCAATGCGCTTCAACCTATCTC
AGGAATTTGGCTAATGGGCGAAGGAGCAAGTATGCCGATGGTCGTTGAAGAGTTAGAGCGACATTTTCAGTTAAGTTGTG
AGTCTTTGAACCCCCTATCTTTGTTTGAGAATAAGGTCGCGAAAAAACGTCGATTACCCATGGATTGGCAACATTTTGGT
ATTGCAGCAGGCATGGCGATGAGTGGACTCAAGTGGCAGGGAGAAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (8-220)

• Type IV pilus assembly protein PilM; (PilM_2) (242-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Vibrio cholerae strain A1552	53.392	99.413	0.531
pilM	Vibrio campbellii strain DS40M4	47.661	100	0.478