Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACE4QZ_RS19095 Genome accession   NZ_CP169881
Coordinates   4055985..4058198 (-) Length   737 a.a.
NCBI ID   WP_331245272.1    Uniprot ID   -
Organism   Pseudomonas sp. DCA-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4050985..4063198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4QZ_RS19070 - 4051472..4051657 (-) 186 WP_003247142.1 Trm112 family protein -
  ACE4QZ_RS19075 lpxK 4051702..4052703 (-) 1002 WP_021784972.1 tetraacyldisaccharide 4'-kinase -
  ACE4QZ_RS19080 - 4052703..4053137 (-) 435 WP_021784971.1 ExbD/TolR family protein -
  ACE4QZ_RS19085 exbB 4053134..4053769 (-) 636 WP_031322710.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACE4QZ_RS19090 - 4054313..4055308 (-) 996 WP_410480109.1 IS110 family transposase -
  ACE4QZ_RS19095 comA 4055985..4058198 (-) 2214 WP_331245272.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACE4QZ_RS19100 - 4058341..4058973 (+) 633 WP_143514802.1 DUF2062 domain-containing protein -
  ACE4QZ_RS19105 - 4058857..4059636 (-) 780 WP_003247128.1 ABC transporter permease -
  ACE4QZ_RS19110 - 4059633..4060565 (-) 933 WP_019752231.1 ABC transporter ATP-binding protein -
  ACE4QZ_RS19115 - 4060699..4061322 (-) 624 WP_021784803.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79744.53 Da        Isoelectric Point: 10.1322

>NTDB_id=1054021 ACE4QZ_RS19095 WP_331245272.1 4055985..4058198(-) (comA) [Pseudomonas sp. DCA-1]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQRALDDRLAAGLDGRTLWLEG
RVVGLPARTAQGVRFELEAARSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVTGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGAGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLLALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFNARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTVLLPLGGVGDALLWLAGGLLEWLFRLLALVAQQHPAWVPPVLPGWAWLLVVLGALLVLLPRGVPLRGLGGVMLLALW
VPREPVPFGQVEVWQLDVGQGLAVLLQTRHHTLLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMVISHAHADHAGGAA
AIQRGLPVRRAIGGEALDDVQLQPCVSGEQWDWDGVRFSLWRWADGQSSNDRSCVLLIEAQGERLLLAGDMEAAAERAWL
AETEAPRIDWLQAPHHGSRSSSTEAFIRATAARGVLISRGRNNSFGHPHVQVMERYQRHGLAVHDTAVEGALRLVLGRQG
EVEFVRGQRRFWRAQLD

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1054021 ACE4QZ_RS19095 WP_331245272.1 4055985..4058198(-) (comA) [Pseudomonas sp. DCA-1]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTTCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTATGGCCGTTGGGTTGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCCGCTCAGCGGGCCCTTGATGATCGTCTGGCGGCCGGCCTGGATGGCCGCACCTTGTGGCTGGAGGGG
CGGGTAGTCGGCTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGCGGCCCGTTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGTCTGCTGAACCCGCATGGGCCTGACCGGGAAGCACAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTAAAGGCGGGGCAGTTGCTGGCGCCAGTAACCGGTGGTTGGCGCGATGCGTTACGTCAGCGTTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCCCGGGAGGACTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTTGCCGGACTGGCGCGTTGGGGCCTGTGGCCGGCAAGGTTACCGTGGTTACCTTGGGCCTGCGGCTTGGCCATGGCCGC
AGCGCTGGCCTACGGCTGGTTGGCCGGTGCTGGCGTACCGGTGCAGCGTGCTTGCCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGTCACCTTGGCGCTTTCTTTCCGTTGCTGCTTGCGCTGGTCGCCGTGCTCGTCTTCGAGCCGTTG
GCGGCGTTGTTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTTATCTATTGCTTCAACGCCCGTTTGGGTGG
TTGGCGGCCCTGGCAGGCCTGGACGCGTGCGCAATGGGTGATCGCCATTGGCTTGCTGCCGGTGTTGCTGGCCACGGGGT
TGCCGGTGAGCCTGAGTGCGCCGCTGGCCAATCTTGTCGCGGTGCCATGGGTCAGCCTGGCGGTGTTGCCGTTGGCGTTG
CTGGGTACAGTGCTGCTGCCGCTGGGTGGGGTAGGGGACGCGCTGCTGTGGCTGGCGGGTGGCCTGCTGGAATGGCTGTT
CCGGTTGCTGGCGTTGGTGGCGCAGCAGCATCCGGCGTGGGTGCCCCCGGTGCTGCCAGGGTGGGCCTGGCTACTGGTGG
TGCTGGGTGCGCTGCTGGTGCTGCTGCCCCGTGGCGTGCCTTTGCGTGGGTTGGGTGGGGTCATGTTGCTGGCACTGTGG
GTGCCCAGGGAGCCAGTGCCGTTCGGCCAGGTCGAGGTCTGGCAATTGGATGTCGGTCAGGGGCTGGCGGTGCTGCTGCA
GACTAGGCATCACACCCTGCTCTACGATGCCGGTCCGGCCCGGGGAGAGAGCGACCTGGGGGAGCGGGTGGTGCTGCCGA
CTCTGCGCAAGCTGGGGGTGGGTAGCCTCGACCTGATGGTGATCAGTCATGCACATGCTGACCATGCTGGCGGTGCTGCG
GCAATACAACGTGGTCTGCCGGTCAGGCGGGCAATTGGTGGGGAAGCGCTGGATGACGTGCAATTGCAGCCTTGCGTCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGCTGTGGCGCTGGGCGGACGGGCAGAGCAGCAATGACCGTTCTT
GTGTGTTGTTGATAGAGGCGCAGGGCGAGCGTCTGCTGCTGGCGGGGGATATGGAAGCTGCGGCCGAACGGGCCTGGTTG
GCAGAGACTGAAGCGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGCCGCAGCTCGTCCACCGAGGCGTTCAT
TCGGGCAACCGCAGCGCGGGGGGTATTGATTTCGCGAGGGCGCAACAACAGCTTCGGGCACCCGCATGTGCAGGTGATGG
AGCGTTATCAGCGGCATGGGTTGGCGGTGCATGACACGGCGGTGGAGGGCGCGTTGCGGTTGGTGTTGGGGCGGCAGGGA
GAAGTTGAGTTCGTTCGGGGGCAGCGGCGGTTTTGGCGGGCTCAACTGGATTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-671)

Domain of unknown function (DUF4131) (DUF4131)

(12-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.645

98.1

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.821

100

0.37

Multiple sequence alignment