Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   ABUS10_RS01580 Genome accession   NZ_CP169869
Coordinates   340528..341010 (+) Length   160 a.a.
NCBI ID   WP_199947837.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335528..346010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS01570 pilX 335831..336649 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS10_RS01575 pilY1 336661..340515 (+) 3855 WP_199947835.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS10_RS01580 pilY2 340528..341010 (+) 483 WP_199947837.1 type IV pilin protein Machinery gene
  ABUS10_RS01585 pilE 341007..341432 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  ABUS10_RS01590 rpsP 341579..341830 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS10_RS01595 rimM 341850..342398 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  ABUS10_RS01600 trmD 342444..343184 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS10_RS01605 rplS 343392..343760 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS10_RS01610 - 343813..344754 (-) 942 WP_085943440.1 triacylglycerol lipase -
  ABUS10_RS01615 - 344869..345903 (-) 1035 WP_032039374.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17588.84 Da        Isoelectric Point: 8.8351

>NTDB_id=1053851 ABUS10_RS01580 WP_199947837.1 340528..341010(+) (pilY2) [Acinetobacter baumannii strain Up280]
MNKYSILRFNQGVTLIELMVVVVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1053851 ABUS10_RS01580 WP_199947837.1 340528..341010(+) (pilY2) [Acinetobacter baumannii strain Up280]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGGTTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

92.5

100

0.925
  comE Acinetobacter baylyi ADP1

40.116

100

0.431

Multiple sequence alignment