Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS10_RS01570 Genome accession   NZ_CP169869
Coordinates   335831..336649 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 330831..341649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS01535 - 331413..331543 (-) 131 Protein_293 hypothetical protein -
  ABUS10_RS01540 rpoZ 331582..331860 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS10_RS01545 gmk 331933..332562 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS10_RS01550 ispH 332685..333635 (+) 951 WP_000407066.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS10_RS01555 fimU 333805..334278 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS10_RS01560 pilV 334272..334832 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS10_RS01565 pilW 334833..335834 (+) 1002 WP_000079198.1 PilW family protein Machinery gene
  ABUS10_RS01570 pilX 335831..336649 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS10_RS01575 pilY1 336661..340515 (+) 3855 WP_199947835.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS10_RS01580 pilY2 340528..341010 (+) 483 WP_199947837.1 type IV pilin protein Machinery gene
  ABUS10_RS01585 pilE 341007..341432 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=1053849 ABUS10_RS01570 WP_000149377.1 335831..336649(+) (pilX) [Acinetobacter baumannii strain Up280]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053849 ABUS10_RS01570 WP_000149377.1 335831..336649(+) (pilX) [Acinetobacter baumannii strain Up280]
ATGACCCATTTAAATTATAAAAATATCAAAGGTCGATCTAAGGAAACAGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATCGTTATCTCTGTAGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment