Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS10_RS01585 Genome accession   NZ_CP169869
Coordinates   341007..341432 (+) Length   141 a.a.
NCBI ID   WP_005130737.1    Uniprot ID   A0AAX0TXJ3
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336007..346432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS01575 pilY1 336661..340515 (+) 3855 WP_199947835.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS10_RS01580 pilY2 340528..341010 (+) 483 WP_199947837.1 type IV pilin protein Machinery gene
  ABUS10_RS01585 pilE 341007..341432 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  ABUS10_RS01590 rpsP 341579..341830 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS10_RS01595 rimM 341850..342398 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  ABUS10_RS01600 trmD 342444..343184 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS10_RS01605 rplS 343392..343760 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS10_RS01610 - 343813..344754 (-) 942 WP_085943440.1 triacylglycerol lipase -
  ABUS10_RS01615 - 344869..345903 (-) 1035 WP_032039374.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.34 Da        Isoelectric Point: 7.1291

>NTDB_id=1053852 ABUS10_RS01585 WP_005130737.1 341007..341432(+) (pilE) [Acinetobacter baumannii strain Up280]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLHKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1053852 ABUS10_RS01585 WP_005130737.1 341007..341432(+) (pilE) [Acinetobacter baumannii strain Up280]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCATAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCCTCAAATGCAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.163

100

0.972
  comF Acinetobacter baylyi ADP1

51.429

99.291

0.511

Multiple sequence alignment