Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ABUS10_RS01555 Genome accession   NZ_CP169869
Coordinates   333805..334278 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain Up280     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328805..339278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS10_RS01530 - 329268..331373 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ABUS10_RS01535 - 331413..331543 (-) 131 Protein_293 hypothetical protein -
  ABUS10_RS01540 rpoZ 331582..331860 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS10_RS01545 gmk 331933..332562 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS10_RS01550 ispH 332685..333635 (+) 951 WP_000407066.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS10_RS01555 fimU 333805..334278 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS10_RS01560 pilV 334272..334832 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS10_RS01565 pilW 334833..335834 (+) 1002 WP_000079198.1 PilW family protein Machinery gene
  ABUS10_RS01570 pilX 335831..336649 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=1053846 ABUS10_RS01555 WP_001214065.1 333805..334278(+) (fimU) [Acinetobacter baumannii strain Up280]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1053846 ABUS10_RS01555 WP_001214065.1 333805..334278(+) (fimU) [Acinetobacter baumannii strain Up280]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment