Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABUS13_RS01110 Genome accession   NZ_CP169832
Coordinates   245257..245838 (+) Length   193 a.a.
NCBI ID   WP_001215081.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv648     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 240257..250838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS13_RS01085 - 240878..241231 (+) 354 WP_000580165.1 DUF1304 domain-containing protein -
  ABUS13_RS01090 - 241284..241625 (+) 342 WP_000263329.1 GlpM family protein -
  ABUS13_RS01095 tenA 241675..242349 (-) 675 WP_000899418.1 thiaminase II -
  ABUS13_RS01100 - 242612..243694 (+) 1083 WP_000680213.1 DUF475 domain-containing protein -
  ABUS13_RS01105 - 243841..245205 (+) 1365 WP_000980460.1 MFS transporter -
  ABUS13_RS01110 ssb 245257..245838 (+) 582 WP_001215081.1 single-stranded DNA-binding protein Machinery gene
  ABUS13_RS01115 - 245879..246202 (-) 324 WP_000082712.1 AzlD domain-containing protein -
  ABUS13_RS01120 - 246199..246894 (-) 696 WP_000431599.1 AzlC family ABC transporter permease -
  ABUS13_RS01125 - 246963..247511 (+) 549 WP_000081859.1 helix-turn-helix domain-containing protein -
  ABUS13_RS01130 - 247817..249259 (+) 1443 WP_000718866.1 amino acid permease -
  ABUS13_RS01135 - 249321..250820 (-) 1500 WP_001257161.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21020.88 Da        Isoelectric Point: 6.4822

>NTDB_id=1053463 ABUS13_RS01110 WP_001215081.1 245257..245838(+) (ssb) [Acinetobacter baumannii strain Lv648]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEVWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNQGGGYGQNNGGYGGQVGF
GNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1053463 ABUS13_RS01110 WP_001215081.1 245257..245838(+) (ssb) [Acinetobacter baumannii strain Lv648]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAGTTTTCTATCGCAACAAGTGAAGTTTGGACCGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAGTGGACAGACCAAAATGGTCAAGAACGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTTGCTGGCGGTAATGATTTTAACCAACCACGTTTTAACGCGCCTCAAC
AAGGTGGCGGCTATCAAAATAACAACCAAGGTGGTGGCTACGGCCAAAACAATGGTGGTTATGGTGGCCAAGTTGGTTTC
GGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTCGCTCCTAAAGCGCCACAACAACCAGCATCTGCACCAGCTGATTT
AGACGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.534
  ssb Vibrio cholerae strain A1552

43.564

100

0.456
  ssb Neisseria meningitidis MC58

38.579

100

0.394
  ssb Neisseria gonorrhoeae MS11

38.579

100

0.394

Multiple sequence alignment