Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   ABUS42_RS10525 Genome accession   NZ_CP169819
Coordinates   2209499..2209981 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Lv419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2204499..2214981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS10515 pilX 2204802..2205620 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS42_RS10520 pilY1 2205632..2209486 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS42_RS10525 pilY2 2209499..2209981 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABUS42_RS10530 pilE 2209978..2210403 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS42_RS10535 rpsP 2210550..2210801 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS42_RS10540 rimM 2210821..2211369 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS42_RS10545 trmD 2211415..2212155 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS42_RS10550 rplS 2212363..2212731 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS42_RS10555 - 2212784..2213725 (-) 942 WP_085943440.1 triacylglycerol lipase -
  ABUS42_RS10560 - 2213840..2214874 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=1053405 ABUS42_RS10525 WP_001046417.1 2209499..2209981(+) (pilY2) [Acinetobacter baumannii strain Lv419]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1053405 ABUS42_RS10525 WP_001046417.1 2209499..2209981(+) (pilY2) [Acinetobacter baumannii strain Lv419]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444

Multiple sequence alignment