Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ABUS42_RS10530 Genome accession   NZ_CP169819
Coordinates   2209978..2210403 (+) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii strain Lv419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2204978..2215403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS10520 pilY1 2205632..2209486 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS42_RS10525 pilY2 2209499..2209981 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABUS42_RS10530 pilE 2209978..2210403 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ABUS42_RS10535 rpsP 2210550..2210801 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  ABUS42_RS10540 rimM 2210821..2211369 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  ABUS42_RS10545 trmD 2211415..2212155 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ABUS42_RS10550 rplS 2212363..2212731 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  ABUS42_RS10555 - 2212784..2213725 (-) 942 WP_085943440.1 triacylglycerol lipase -
  ABUS42_RS10560 - 2213840..2214874 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=1053406 ABUS42_RS10530 WP_000788342.1 2209978..2210403(+) (pilE) [Acinetobacter baumannii strain Lv419]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=1053406 ABUS42_RS10530 WP_000788342.1 2209978..2210403(+) (pilE) [Acinetobacter baumannii strain Lv419]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment