Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ABUS42_RS10515 Genome accession   NZ_CP169819
Coordinates   2204802..2205620 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Lv419     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2199802..2210620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS42_RS10480 - 2200384..2200514 (-) 131 Protein_2037 hypothetical protein -
  ABUS42_RS10485 rpoZ 2200553..2200831 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ABUS42_RS10490 gmk 2200904..2201533 (-) 630 WP_000015937.1 guanylate kinase -
  ABUS42_RS10495 ispH 2201656..2202606 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ABUS42_RS10500 fimU 2202776..2203249 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ABUS42_RS10505 pilV 2203243..2203803 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ABUS42_RS10510 pilW 2203804..2204805 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  ABUS42_RS10515 pilX 2204802..2205620 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ABUS42_RS10520 pilY1 2205632..2209486 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  ABUS42_RS10525 pilY2 2209499..2209981 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  ABUS42_RS10530 pilE 2209978..2210403 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=1053403 ABUS42_RS10515 WP_000149374.1 2204802..2205620(+) (pilX) [Acinetobacter baumannii strain Lv419]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1053403 ABUS42_RS10515 WP_000149374.1 2204802..2205620(+) (pilX) [Acinetobacter baumannii strain Lv419]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment