Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABUS32_RS01545 Genome accession   NZ_CP169805
Coordinates   328493..329551 (+) Length   352 a.a.
NCBI ID   WP_005119265.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HvAb04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323493..334551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS32_RS01530 - 324600..324932 (+) 333 WP_000169603.1 hypothetical protein -
  ABUS32_RS01535 - 324935..325759 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  ABUS32_RS01540 ponA 325777..328332 (-) 2556 WP_000736686.1 penicillin-binding protein PBP1a -
  ABUS32_RS01545 pilM 328493..329551 (+) 1059 WP_005119265.1 pilus assembly protein PilM Machinery gene
  ABUS32_RS01550 pilN 329551..330192 (+) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  ABUS32_RS01555 pilO 330189..330929 (+) 741 WP_000076097.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS32_RS01560 pilP 330940..331467 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS32_RS01565 pilQ 331530..333695 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS32_RS01570 aroK 333707..334276 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39000.54 Da        Isoelectric Point: 4.4618

>NTDB_id=1053226 ABUS32_RS01545 WP_005119265.1 328493..329551(+) (pilM) [Acinetobacter baumannii strain HvAb04]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDDEREVQIRVDAEQYIPFPLDEVSLDSEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
VDLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1053226 ABUS32_RS01545 WP_005119265.1 328493..329551(+) (pilM) [Acinetobacter baumannii strain HvAb04]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGACGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTCTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACCCGCGTTGAAGTGCTTGAATTG
GTAGATTTAAATCCTAAATTGGCTGATGTTGAAAGTTACGCGGTTGAACGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACGACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTCTTTGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCCGAGCGAAAAAAGATCGTTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGTTCACTACAATTTTTCTTTTCTTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.432

100

0.994
  comM Acinetobacter nosocomialis M2

98.58

100

0.986
  comM Acinetobacter baylyi ADP1

80.966

100

0.81
  pilM Legionella pneumophila strain ERS1305867

41.525

100

0.418

Multiple sequence alignment