Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABUS26_RS01595 Genome accession   NZ_CP169795
Coordinates   338690..339748 (+) Length   352 a.a.
NCBI ID   WP_031961398.1    Uniprot ID   A0AAD2U6A0
Organism   Acinetobacter baumannii strain Hv780     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333690..344748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS26_RS01580 - 334796..335128 (+) 333 WP_000169602.1 hypothetical protein -
  ABUS26_RS01585 - 335131..335955 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  ABUS26_RS01590 ponA 335973..338528 (-) 2556 WP_031965088.1 penicillin-binding protein PBP1a -
  ABUS26_RS01595 pilM 338690..339748 (+) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  ABUS26_RS01600 pilN 339748..340389 (+) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  ABUS26_RS01605 pilO 340386..341126 (+) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS26_RS01610 pilP 341137..341664 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS26_RS01615 pilQ 341727..343892 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS26_RS01620 aroK 343904..344473 (+) 570 WP_000643712.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39046.61 Da        Isoelectric Point: 4.4657

>NTDB_id=1053103 ABUS26_RS01595 WP_031961398.1 338690..339748(+) (pilM) [Acinetobacter baumannii strain Hv780]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEALERAMNLANPQTTHAAI
AVPTSTVIHKTIEMDADMSDEEREVQIRVDAEQYIPFPLDEVSLDFEVLPDRLANPNRVNVLLVATRTENVETRVEVLEL
ADLNPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQNGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
ASRAKKDRSLPDDYEIEVLDPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDVQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1053103 ABUS26_RS01595 WP_031961398.1 338690..339748(+) (pilM) [Acinetobacter baumannii strain Hv780]
GTGCTCAGGTTATATCGTAAACCTAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTCAAGAACGGTAAATATTGGGTAGAAAGCTATGCTTTGATGCCTTTACCCGAAAACAGTGTAGTTGAAAAAAATA
TCTTAAATCCAGAAGCAGTTGCAGAGGCTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCACTCATGCTGCAATT
GCTGTTCCGACATCGACGGTTATTCATAAAACTATCGAAATGGATGCAGATATGAGCGATGAAGAACGCGAAGTTCAGAT
TCGTGTAGATGCGGAGCAGTATATACCGTTCCCTTTAGATGAGGTGAGCCTTGATTTTGAGGTTTTGCCGGATCGTCTTG
CGAATCCAAATCGTGTAAATGTGCTCTTGGTCGCCACAAGAACAGAAAACGTTGAAACACGCGTTGAAGTGCTTGAATTG
GCAGATTTAAATCCTAAATTGGCTGATGTTGAAAGTTACGCGGTTGAGCGCGCTTTTAGCGTGTTTGCTGATAGCTTACC
GATGGGTGCAAATACCATAGGGATTTTAGATATCGGCCATACCATGACAACATTATCTGTCATGCAAAATGGCAAGATTA
TTTATACACGAGAGCAGGTTTTCGGCGGAAAACAACTTACGCTTGAAATTCAAAGTCGTTATGGTTTGTCTTTAGAAGAA
GCAAGCAGAGCGAAAAAAGATCGTTCTTTACCAGATGATTATGAAATTGAAGTGCTAGACCCATTTCTAGATGCGGTAGT
TCAGCAGGCGGCCCGCTCACTACAATTTTTCTTTTCCTCATCCCAATTTAACGAAATAGACCATATTTTGCTCGCTGGTG
GAAATGCGAATATTCCAGGCCTTGCCAAGCTTTTGCAGCAAAAATTAGGTTACCGTGTCACGATTGCCAACCCGTTTTTA
CAAATGGGCTTTTCTCCTCAAGTCGACGTTCAAAAAATTGAAAATGATGCTTCATCTTTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

99.716

100

0.997
  comM Acinetobacter nosocomialis M2

98.864

100

0.989
  comM Acinetobacter baylyi ADP1

81.25

100

0.813
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423

Multiple sequence alignment