Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ABUS31_RS03960 | Genome accession | NZ_CP169785 |
| Coordinates | 828327..829445 (-) | Length | 372 a.a. |
| NCBI ID | WP_000347039.1 | Uniprot ID | A0A9P2XLL8 |
| Organism | Acinetobacter baumannii strain Hv652 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 787584..853952 | 828327..829445 | within | 0 |
Gene organization within MGE regions
Location: 787584..853952
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABUS31_RS03765 | - | 788219..789844 (-) | 1626 | WP_000834616.1 | NAD+ synthase | - |
| ABUS31_RS03770 | - | 790229..790789 (-) | 561 | WP_001048150.1 | hypothetical protein | - |
| ABUS31_RS03775 | - | 790880..791740 (-) | 861 | WP_000838098.1 | pirin family protein | - |
| ABUS31_RS03780 | hemJ | 791911..792363 (-) | 453 | WP_000339889.1 | protoporphyrinogen oxidase HemJ | - |
| ABUS31_RS03785 | - | 792382..793611 (-) | 1230 | WP_000832710.1 | beta-ketoacyl-ACP synthase II | - |
| ABUS31_RS03790 | - | 793908..795233 (+) | 1326 | WP_000160011.1 | EcsC family protein | - |
| ABUS31_RS03795 | rpsL | 795434..795808 (+) | 375 | WP_000246374.1 | 30S ribosomal protein S12 | - |
| ABUS31_RS03800 | rpsG | 795968..796438 (+) | 471 | WP_001138055.1 | 30S ribosomal protein S7 | - |
| ABUS31_RS03805 | fusA | 796617..798755 (+) | 2139 | WP_000113824.1 | elongation factor G | - |
| ABUS31_RS03810 | tuf | 798850..800040 (+) | 1191 | WP_001029610.1 | elongation factor Tu | - |
| ABUS31_RS03815 | - | 800244..801125 (+) | 882 | WP_000992305.1 | metal-dependent hydrolase | - |
| ABUS31_RS03820 | - | 801362..802237 (+) | 876 | WP_000992291.1 | metal-dependent hydrolase | - |
| ABUS31_RS03825 | rimI | 802346..802801 (+) | 456 | WP_000621543.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| ABUS31_RS03830 | - | 802846..803661 (-) | 816 | WP_000844343.1 | arginyltransferase | - |
| ABUS31_RS03835 | aat | 803680..804411 (-) | 732 | WP_000854785.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| ABUS31_RS03840 | trxB | 804531..805478 (-) | 948 | WP_001276144.1 | thioredoxin-disulfide reductase | - |
| ABUS31_RS03845 | - | 805748..808780 (+) | 3033 | WP_000127823.1 | DNA translocase FtsK | - |
| ABUS31_RS03850 | rhtC | 808930..809550 (+) | 621 | WP_000959259.1 | threonine export protein RhtC | - |
| ABUS31_RS03855 | - | 809606..810205 (-) | 600 | WP_001067704.1 | hypothetical protein | - |
| ABUS31_RS03860 | - | 810293..811261 (-) | 969 | WP_012308653.1 | IS30 family transposase | - |
| ABUS31_RS03870 | - | 812633..812920 (-) | 288 | WP_001218560.1 | PA4642 family protein | - |
| ABUS31_RS03875 | minE | 813004..813276 (-) | 273 | WP_000896934.1 | cell division topological specificity factor MinE | - |
| ABUS31_RS03880 | minD | 813279..814091 (-) | 813 | WP_001074362.1 | septum site-determining protein MinD | - |
| ABUS31_RS03885 | minC | 814162..814884 (-) | 723 | WP_000763677.1 | septum site-determining protein MinC | - |
| ABUS31_RS03890 | - | 815006..816052 (-) | 1047 | WP_001181639.1 | hypothetical protein | - |
| ABUS31_RS03895 | - | 816069..816995 (-) | 927 | WP_000100965.1 | acyltransferase | - |
| ABUS31_RS03900 | - | 817240..817893 (+) | 654 | WP_001202415.1 | OmpA family protein | - |
| ABUS31_RS03905 | rep | 818087..820126 (+) | 2040 | WP_000093035.1 | DNA helicase Rep | - |
| ABUS31_RS03910 | dut | 820151..820603 (+) | 453 | WP_000868152.1 | dUTP diphosphatase | - |
| ABUS31_RS03915 | - | 820803..822221 (+) | 1419 | WP_001102845.1 | phosphomannomutase/phosphoglucomutase | - |
| ABUS31_RS03920 | argB | 822236..823144 (+) | 909 | WP_001135419.1 | acetylglutamate kinase | - |
| ABUS31_RS03925 | - | 823265..824047 (+) | 783 | WP_000890283.1 | GNAT family N-acetyltransferase | - |
| ABUS31_RS03930 | - | 824156..825004 (+) | 849 | WP_000336548.1 | class II glutamine amidotransferase | - |
| ABUS31_RS03935 | - | 825257..825712 (+) | 456 | WP_000782976.1 | bacteriohemerythrin | - |
| ABUS31_RS03940 | - | 825865..826932 (+) | 1068 | WP_002019572.1 | hypothetical protein | - |
| ABUS31_RS03945 | - | 826932..827255 (+) | 324 | WP_000442587.1 | RnfH family protein | - |
| ABUS31_RS03950 | - | 827310..827708 (-) | 399 | WP_001170994.1 | outer membrane protein assembly factor BamE | - |
| ABUS31_RS03955 | fur | 827820..828257 (+) | 438 | WP_001122847.1 | ferric iron uptake transcriptional regulator | - |
| ABUS31_RS03960 | pilU | 828327..829445 (-) | 1119 | WP_000347039.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ABUS31_RS03965 | pilT | 829473..830510 (-) | 1038 | WP_000355489.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| ABUS31_RS03970 | - | 830637..831329 (+) | 693 | WP_001108512.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| ABUS31_RS03975 | - | 831531..835127 (-) | 3597 | WP_000698785.1 | AAA family ATPase | - |
| ABUS31_RS03980 | - | 835137..836405 (-) | 1269 | WP_000116701.1 | exonuclease SbcCD subunit D | - |
| ABUS31_RS03985 | - | 836569..837042 (+) | 474 | WP_000974358.1 | OsmC family protein | - |
| ABUS31_RS03990 | - | 837110..837487 (-) | 378 | WP_001059438.1 | VOC family protein | - |
| ABUS31_RS03995 | - | 837867..838319 (+) | 453 | WP_000164153.1 | ABZJ_00895 family protein | - |
| ABUS31_RS04000 | - | 838409..839314 (+) | 906 | WP_001039356.1 | TIGR01777 family oxidoreductase | - |
| ABUS31_RS04005 | - | 839306..840421 (-) | 1116 | WP_000546701.1 | FAD-binding oxidoreductase | - |
| ABUS31_RS04010 | hemB | 840447..841460 (-) | 1014 | WP_000222569.1 | porphobilinogen synthase | - |
| ABUS31_RS04015 | - | 841603..842100 (+) | 498 | WP_002019577.1 | thioesterase family protein | - |
| ABUS31_RS04020 | - | 842370..843521 (+) | 1152 | WP_000128703.1 | EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit | - |
| ABUS31_RS04025 | - | 843528..845051 (+) | 1524 | WP_000857095.1 | DHA2 family efflux MFS transporter permease subunit | - |
| ABUS31_RS04030 | ggt | 845354..847339 (+) | 1986 | WP_001042923.1 | gamma-glutamyltransferase | - |
| ABUS31_RS04040 | - | 848041..849270 (+) | 1230 | WP_000831316.1 | tyrosine-type recombinase/integrase | - |
| ABUS31_RS04045 | - | 849418..850185 (+) | 768 | WP_000578616.1 | hypothetical protein | - |
| ABUS31_RS04050 | - | 850395..850610 (+) | 216 | WP_000153154.1 | hypothetical protein | - |
| ABUS31_RS04055 | - | 850613..850822 (+) | 210 | WP_001016479.1 | helix-turn-helix domain-containing protein | - |
| ABUS31_RS04060 | - | 850819..851373 (+) | 555 | WP_001988245.1 | BRO family protein | - |
| ABUS31_RS04065 | - | 851366..851734 (+) | 369 | WP_001046481.1 | hypothetical protein | - |
| ABUS31_RS04070 | - | 851744..852049 (+) | 306 | WP_000787149.1 | hypothetical protein | - |
| ABUS31_RS04075 | - | 852174..852452 (+) | 279 | WP_001064707.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 372 a.a. Molecular weight: 41933.13 Da Isoelectric Point: 6.6944
>NTDB_id=1052978 ABUS31_RS03960 WP_000347039.1 828327..829445(-) (pilU) [Acinetobacter baumannii strain Hv652]
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ
MDFNDLLNLMVEKKSSDLFITDGVAPSMKINGQIVPISKNSLSGEVIGQLLHSIMSEKQRREFAETRECNFAIMNREKTA
RFRVSAFQQRDMPGMVLRRIETKIPSIDDLQLPPVLKDLSMTKRGIIIFVGATGTGKSTSLASMISHRNHNSKGHIITIE
DPIEFIHEHAGCIITQREVGIDTDSFEIALKNTLRQAPDVILIGEIRSREVMDYAIGFAETGHLVLATMHANNANQALDR
IIHFFESDRHSQLYMDLSLNLKAMIAQQLIPTPDGNSRRAAIEILINSPLISDYIRKGEIHEIKDLMKRSRELGMQTFDQ
ALFDLYKAGQITYKDALKHADSPNDLRLTIKLADEGPDQLSDGKQHLTFDRQ
Nucleotide
Download Length: 1119 bp
>NTDB_id=1052978 ABUS31_RS03960 WP_000347039.1 828327..829445(-) (pilU) [Acinetobacter baumannii strain Hv652]
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA
ATGGATTTTAATGACTTGCTCAACCTGATGGTTGAAAAAAAATCTTCCGATCTCTTTATTACAGATGGCGTTGCGCCCTC
TATGAAGATTAACGGGCAAATTGTTCCAATTTCAAAAAACAGTCTTTCTGGGGAAGTGATTGGTCAACTGTTACATTCCA
TCATGAGTGAAAAACAACGCAGAGAATTTGCAGAAACTCGTGAATGTAACTTTGCCATTATGAACCGTGAAAAAACGGCG
CGTTTTCGTGTCAGTGCTTTTCAGCAGCGCGACATGCCGGGCATGGTACTACGTCGTATTGAAACCAAGATTCCTTCAAT
TGATGACTTGCAGTTACCGCCTGTACTTAAAGATTTATCGATGACCAAACGCGGCATTATTATTTTTGTAGGCGCGACAG
GCACAGGTAAATCTACTTCACTGGCTTCAATGATCAGCCATCGTAACCATAACTCTAAGGGCCATATCATTACCATTGAA
GACCCGATTGAGTTTATTCACGAACATGCAGGTTGCATCATTACTCAGCGTGAAGTCGGGATCGATACCGACTCATTTGA
AATTGCCTTGAAAAATACACTACGACAAGCGCCGGATGTGATCTTAATTGGTGAGATCCGTTCTCGTGAAGTCATGGACT
ACGCGATTGGCTTTGCTGAAACAGGCCATCTTGTATTAGCTACCATGCACGCTAACAACGCCAACCAAGCGCTCGACCGT
ATTATTCACTTTTTTGAAAGTGACCGTCATAGTCAGCTTTACATGGACTTGTCACTTAACTTAAAGGCAATGATTGCGCA
GCAGCTCATTCCAACACCAGATGGTAATTCACGCCGTGCAGCAATTGAGATTTTAATTAACTCACCATTAATTTCAGACT
ACATCCGTAAAGGTGAAATTCATGAAATTAAAGATTTGATGAAACGCTCACGTGAACTTGGTATGCAGACCTTTGACCAA
GCTTTATTTGATTTATATAAAGCTGGTCAAATTACCTACAAAGATGCACTTAAACATGCTGACTCACCGAACGATTTACG
TTTAACCATTAAACTTGCAGATGAAGGTCCTGATCAATTATCAGACGGGAAACAGCATTTAACTTTTGACCGCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
75.926 |
100 |
0.772 |
| pilU | Pseudomonas stutzeri DSM 10701 |
69.565 |
98.925 |
0.688 |
| pilU | Vibrio cholerae strain A1552 |
53.243 |
99.462 |
0.53 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.486 |
93.011 |
0.395 |