Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   AB3222_RS02950 Genome accession   NZ_OZ064360
Coordinates   562081..564045 (+) Length   654 a.a.
NCBI ID   WP_367370706.1    Uniprot ID   -
Organism   Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 557081..569045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3222_RS02925 - 557267..558052 (+) 786 WP_172601004.1 hypothetical protein -
  AB3222_RS02930 - 558227..559300 (+) 1074 WP_367370703.1 AAA family ATPase -
  AB3222_RS02935 - 559397..560350 (+) 954 WP_367370704.1 2-dehydropantoate 2-reductase -
  AB3222_RS02940 msrA 560404..560931 (+) 528 WP_367370705.1 peptide-methionine (S)-S-oxide reductase MsrA -
  AB3222_RS02945 rnz 561104..562069 (+) 966 WP_014974074.1 ribonuclease Z -
  AB3222_RS02950 recJ 562081..564045 (+) 1965 WP_367370706.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  AB3222_RS02955 - 564163..564693 (+) 531 WP_367370707.1 adenine phosphoribosyltransferase -
  AB3222_RS02960 - 564794..565492 (-) 699 WP_367370708.1 SAM-dependent methyltransferase -
  AB3222_RS02965 - 565482..566054 (-) 573 WP_367370709.1 DsbA family protein -
  AB3222_RS02970 - 566332..566910 (+) 579 WP_014974079.1 GTP pyrophosphokinase family protein -
  AB3222_RS02975 - 566907..567704 (+) 798 WP_014974080.1 NAD kinase -
  AB3222_RS02980 - 567761..568663 (+) 903 WP_014974081.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 71844.93 Da        Isoelectric Point: 4.9619

>NTDB_id=1052736 AB3222_RS02950 WP_367370706.1 562081..564045(+) (recJ) [Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA]
MSQKNWHILPQPSEKSVKQLTTQLNIDHLTATIVAQKGYTTPETAFQYLQPSIEQLHDPMALHDMDKAFERLTEAAFGGE
KIVVYGDYDLDGVTSTAVMVEALEVLGADVTAYIPNRFTDGYGPNIDVYKRLIADGAQVIVTVDNGMSGHEAVAYAMSQG
VDVIITDHHEMAPTLPEAYAVIHPRHPEGHYPFHDLSGVGVAFKVAQALLTDGQAISDRSDLPTEMLDLVALGEIADIVS
LTDENRTLVSWGLKQLSASPRPGLSALLKNAGQAANEPIISETVSFKIAPRLNAVGRLGDAKLALDLLLSQDPDEAAELA
SQIEAINAQRQEIVEEVFGAAKQMALSEAHQNDEVLIISGIDWHQGVLGIVASRLVELLHKPAIVLSLVAGNYKGSGRSY
GDFDLYALMSQYRDLYDTFGGHANALGLAISEDNLVILRQRIATLSALNIREKPVTINLTLPASDMTTSVYDGLTLLEPF
GTDNPQPIFEVKQAPITKVITMGKSKQHIKLTLNNQVDAVGFNHPDWAASMLNQKSMSFVATMGLNYFRGKKQLQLLLTD
VDLPAIVENDAHKQFFSQVYKFIYTHQDLNFAQNLDKIAKQLYINKTDLNIMVQVFIELGFVQVINSGFVKIIPNAPQRD
LTESTTYQKFLAKR

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=1052736 AB3222_RS02950 WP_367370706.1 562081..564045(+) (recJ) [Leuconostoc carnosum isolate Leuconostoc carnosum A1b-VegA]
ATGAGTCAAAAAAATTGGCATATACTACCACAACCATCTGAAAAATCCGTTAAGCAACTGACAACACAATTAAATATTGA
TCATTTAACTGCGACGATTGTCGCACAAAAAGGTTACACAACACCGGAGACGGCGTTTCAGTATTTACAACCAAGTATTG
AACAGCTTCATGATCCTATGGCACTACACGACATGGATAAAGCTTTTGAACGTTTAACTGAAGCAGCATTTGGTGGTGAA
AAGATTGTTGTTTATGGTGATTATGATTTAGATGGGGTCACAAGCACAGCGGTTATGGTGGAAGCGCTTGAAGTATTAGG
CGCTGATGTCACAGCTTATATTCCCAATCGTTTCACTGACGGTTATGGCCCTAACATTGATGTTTATAAACGGTTGATTG
CTGACGGTGCGCAAGTGATTGTGACAGTCGACAATGGTATGAGCGGGCATGAAGCCGTTGCGTATGCCATGAGTCAGGGT
GTTGATGTGATTATTACTGATCATCATGAAATGGCACCTACATTACCTGAAGCTTACGCAGTGATACATCCAAGACACCC
CGAAGGTCATTATCCATTTCATGATTTATCAGGTGTAGGCGTGGCTTTCAAGGTTGCACAAGCTTTACTGACGGATGGGC
AGGCGATTAGTGATCGTTCCGATCTACCAACGGAAATGCTTGATTTAGTAGCTTTAGGTGAAATTGCCGATATAGTTTCA
TTAACTGATGAAAATCGGACACTTGTTTCCTGGGGATTAAAGCAACTAAGCGCTAGTCCACGACCAGGGTTATCTGCATT
GCTCAAAAATGCTGGTCAAGCAGCCAATGAACCTATTATTTCAGAAACTGTTTCCTTTAAAATCGCGCCACGCTTAAATG
CTGTGGGACGTTTAGGGGATGCTAAATTAGCCCTTGATTTACTTTTGAGTCAAGATCCTGATGAAGCAGCGGAATTGGCA
TCACAAATTGAAGCTATTAATGCGCAACGTCAAGAAATTGTTGAAGAAGTATTTGGTGCGGCTAAACAAATGGCTTTATC
TGAAGCACACCAAAACGACGAGGTTTTGATTATATCAGGGATTGATTGGCATCAAGGTGTTTTAGGTATTGTTGCCAGTC
GGTTAGTTGAATTATTACACAAGCCAGCCATTGTTTTAAGTTTGGTTGCTGGTAATTATAAAGGGTCTGGTCGTAGCTAT
GGTGATTTTGATCTTTATGCATTGATGAGTCAGTATCGCGATTTATATGATACCTTTGGTGGTCATGCGAATGCTTTGGG
ATTAGCGATTTCAGAAGATAATTTAGTGATATTGCGTCAGCGAATCGCTACATTATCAGCACTTAACATTCGGGAGAAGC
CTGTGACAATTAATTTGACACTACCCGCAAGTGATATGACAACATCTGTTTATGATGGTTTAACGCTCTTGGAGCCATTT
GGAACCGATAACCCACAGCCGATTTTTGAGGTTAAGCAAGCACCAATTACCAAGGTGATCACAATGGGGAAATCTAAACA
GCATATTAAGCTGACGTTGAACAACCAAGTGGACGCTGTAGGCTTTAACCATCCGGACTGGGCTGCTAGCATGCTGAATC
AAAAAAGCATGTCCTTTGTTGCGACGATGGGGTTGAACTATTTTCGTGGTAAGAAACAGCTACAATTGCTATTAACGGAT
GTTGATTTGCCAGCAATTGTTGAAAATGATGCACATAAACAATTTTTTTCGCAAGTATACAAGTTTATTTACACACACCA
AGACTTGAATTTTGCGCAAAACTTGGATAAAATAGCAAAGCAACTATATATCAACAAAACTGACCTCAATATTATGGTGC
AAGTCTTTATCGAACTTGGTTTTGTGCAAGTGATTAATAGTGGGTTTGTCAAAATTATTCCTAATGCACCACAAAGAGAC
TTAACAGAGTCAACGACTTATCAAAAGTTTTTGGCGAAACGTTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(324-441)

RecJ OB domain (RecJ_OB)

(457-560)

DHH family (DHH)

(81-233)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(573-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

37.879

100

0.42

Multiple sequence alignment