Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACE2AN_RS04575 Genome accession   NZ_CP169564
Coordinates   889702..890655 (+) Length   317 a.a.
NCBI ID   WP_044791175.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 6_2F1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 884702..895655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE2AN_RS04550 rpmG 885445..885594 (+) 150 WP_001809104.1 50S ribosomal protein L33 -
  ACE2AN_RS04555 secG 885634..885867 (+) 234 WP_000282517.1 preprotein translocase subunit SecG -
  ACE2AN_RS04560 rnr 885969..888323 (+) 2355 WP_050224419.1 ribonuclease R -
  ACE2AN_RS04565 smpB 888286..888753 (+) 468 WP_001051750.1 SsrA-binding protein SmpB -
  ACE2AN_RS04570 tehB 888769..889629 (+) 861 WP_000413763.1 SAM-dependent methyltransferase TehB -
  ACE2AN_RS04575 coiA 889702..890655 (+) 954 WP_044791175.1 competence protein CoiA Machinery gene
  ACE2AN_RS04580 pepF 890674..892476 (+) 1803 WP_081528464.1 oligoendopeptidase F Regulator
  ACE2AN_RS04585 - 892478..893191 (+) 714 WP_000230399.1 O-methyltransferase -
  ACE2AN_RS04590 prsA 893258..894199 (+) 942 WP_081528463.1 peptidylprolyl isomerase PrsA -
  ACE2AN_RS04595 - 894318..894659 (-) 342 Protein_906 transposase -
  ACE2AN_RS04600 - 895074..895169 (+) 96 Protein_907 IS630 family transposase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 38285.94 Da        Isoelectric Point: 8.9763

>NTDB_id=1052179 ACE2AN_RS04575 WP_044791175.1 889702..890655(+) (coiA) [Streptococcus pneumoniae strain 6_2F1]
MFVARDARGELVNVLEDKLEKQAYTCPACGGQLHLRQGPSVRTHFAHKSLKDCDFFFENESPEHLANKESLYHWLKKETK
VQLEYPLSELKQIADVFVNGNLALEVQCSLLPQKVLKERSEGYRSQGYQVLWLLGQKLWLKERLTRLQQGFLYFSQNMGF
YVWELDKEKQVLRLKYLIYQDLRGKLHYQIKEFSYGQGSLLEILRLPYKRQKISHFTVSEDKDICRYIRQQLYYQNLFWM
KEQAEAYQKGENILTYGLKEWYPQIRPIVGKFFQIEQDLTSYYQYFYTYYQKNPQNDWQKLYPPAFYQQYFLKNMVE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1052179 ACE2AN_RS04575 WP_044791175.1 889702..890655(+) (coiA) [Streptococcus pneumoniae strain 6_2F1]
ATGTTTGTTGCGAGAGATGCTAGGGGAGAATTGGTAAATGTGTTAGAGGATAAACTTGAGAAGCAAGCATACACCTGCCC
AGCTTGTGGAGGCCAGCTCCATTTGCGTCAAGGACCAAGTGTACGGACGCATTTTGCCCATAAATCCTTAAAAGACTGTG
ATTTTTTCTTTGAAAATGAAAGTCCAGAACACCTGGCCAATAAGGAATCCCTCTATCACTGGTTGAAAAAAGAGACAAAG
GTTCAATTAGAGTATCCGCTTTCAGAACTTAAACAGATTGCGGATGTATTTGTAAATGGCAATCTAGCTCTAGAAGTTCA
GTGTAGTCTCTTGCCTCAGAAAGTCCTTAAAGAGCGAAGTGAGGGATATCGTAGTCAGGGTTACCAAGTACTGTGGTTGC
TGGGTCAAAAACTGTGGCTCAAGGAGCGTTTGACTCGTCTACAGCAAGGTTTTCTTTATTTCAGTCAAAACATGGGCTTT
TATGTTTGGGAATTAGACAAGGAAAAACAAGTTTTAAGACTCAAATACCTGATTTACCAGGATCTCCGCGGTAAACTCCA
TTATCAAATCAAGGAATTTTCCTATGGTCAAGGTAGTTTATTGGAAATATTGCGTCTTCCCTATAAGAGACAAAAAATAT
CTCATTTTACAGTTTCTGAGGACAAGGACATCTGTCGCTATATCCGGCAACAACTTTATTATCAAAATCTCTTTTGGATG
AAAGAACAAGCAGAAGCCTATCAAAAGGGAGAAAATATCCTGACTTATGGACTGAAAGAATGGTATCCACAAATTCGACC
AATAGTGGGCAAATTTTTCCAGATTGAACAAGACTTGACTAGCTATTATCAGTACTTTTATACCTATTACCAAAAAAATC
CTCAAAATGATTGGCAAAAGCTTTATCCACCAGCCTTTTATCAGCAATATTTCTTGAAAAATATGGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(13-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

99.369

100

0.994
  coiA Streptococcus pneumoniae Rx1

98.738

100

0.987
  coiA Streptococcus pneumoniae D39

98.738

100

0.987
  coiA Streptococcus pneumoniae R6

98.738

100

0.987
  coiA Streptococcus mitis NCTC 12261

89.274

100

0.893
  coiA Lactococcus lactis subsp. cremoris KW2

42.593

100

0.435

Multiple sequence alignment