Detailed information NTG1052012

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: ACE4RI_RS09550
• Genome accession: NZ_OZ059820
• Coordinates: 1914609..1915613 (+)
• Length: 334 a.a.
• NCBI ID: WP_001005766.1
• Uniprot ID: -
• Organism: Staphylococcus aureus isolate E1_22S00622-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1909609..1920613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACE4RI_RS09515	mreD	1909764..1910294 (+)	531	WP_001259929.1	rod shape-determining protein MreD	-
ACE4RI_RS09520	rplU	1910781..1911089 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
ACE4RI_RS09525	-	1911095..1911415 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACE4RI_RS09530	rpmA	1911427..1911711 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
ACE4RI_RS09535	obgE	1912201..1913493 (+)	1293	WP_000496090.1	GTPase ObgE	-
ACE4RI_RS09540	-	1913506..1913961 (+)	456	WP_000368902.1	ACT domain-containing protein	-
ACE4RI_RS09545	ruvA	1913975..1914577 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
ACE4RI_RS09550	ruvB	1914609..1915613 (+)	1005	WP_001005766.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACE4RI_RS09555	queA	1915615..1916640 (+)	1026	WP_001019177.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ACE4RI_RS09560	tgt	1916663..1917802 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
ACE4RI_RS09565	yajC	1917821..1918081 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 37687.98 Da
• Isoelectric Point: 5.0865

>NTDB_id=1052012 ACE4RI_RS09550 WP_001005766.1 1914609..1915613(+) (ruvB) [Staphylococcus aureus isolate E1_22S00622-1]
MNERMVDQSMHSEETDFELSLRPTRLRQYIGQNSIKSNLEVFIKAAKLRHEPLDHVLLFGPPGLGKTTLSNIIANEMEVN
IRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVVEEVLYPAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATT
RAGSLTGPLRDRFGVHLRLEYYNESDLKEIIIRTAEVLGTGIDEESAIELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI
YIETTKHALGLLQVDQHGLDYIDHKMMNCIIKQYNGGPVGLDAIAVTIGEERITIEDVYEPFLIQKGFLERTPRGRKATP
LAYEHFAKSNEERE

Nucleotide

• Length: 1005 bp

>NTDB_id=1052012 ACE4RI_RS09550 WP_001005766.1 1914609..1915613(+) (ruvB) [Staphylococcus aureus isolate E1_22S00622-1]
ATGAATGAGCGTATGGTTGATCAATCAATGCATAGTGAAGAAACTGATTTCGAATTGTCGCTTAGACCTACGAGATTACG
ACAATATATTGGTCAAAATTCAATAAAAAGTAATTTAGAAGTATTTATTAAAGCGGCTAAACTTCGTCATGAACCATTAG
ATCATGTATTGCTTTTTGGCCCCCCTGGATTAGGTAAGACAACATTATCTAATATTATTGCCAATGAAATGGAAGTAAAT
ATACGTACGGTATCAGGGCCTTCATTAGAAAGACCTGGTGATTTGGCTGCAATTTTATCAGGACTTCAACCTGGAGATGT
TTTGTTTATTGATGAAATACACAGACTGAGTAGTGTTGTTGAAGAAGTGTTATACCCTGCAATGGAAGATTTCTTTTTAG
ATATTATCATTGGTAAAGGCGATGAGGCTAGAAGTATCCGTATCGACTTACCTCCATTCACTTTGGTAGGTGCAACAACT
CGAGCTGGTAGCTTAACAGGTCCACTAAGGGATCGATTTGGTGTGCACTTAAGATTAGAATATTATAATGAATCAGATTT
AAAAGAAATCATTATTAGAACAGCTGAGGTTTTAGGCACAGGTATTGATGAAGAAAGTGCCATTGAACTAGCTAAACGTT
CTAGAGGGACTCCAAGAGTAGCCAATCGACTATTGAAACGGGTAAGAGACTTCCAGCAAGTGAATGAAGATGAACAAATA
TACATTGAAACAACAAAGCACGCATTAGGTTTACTTCAAGTTGATCAACACGGACTAGATTACATTGATCATAAAATGAT
GAACTGTATTATTAAGCAGTATAATGGTGGACCTGTTGGTTTAGATGCGATTGCCGTAACAATTGGCGAAGAACGTATTA
CAATTGAGGACGTTTATGAGCCATTTCTTATTCAGAAAGGCTTTTTAGAACGTACGCCACGTGGCAGAAAAGCAACACCA
TTAGCTTATGAACATTTTGCAAAGTCGAATGAGGAGAGAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (182-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB C-terminal winged helix domain (WHD_RuvB) (257-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Bacillus subtilis subsp. subtilis str. 168	65.644	97.605	0.641
ruvB	Streptococcus pneumoniae TIGR4	57.879	98.802	0.572
ruvB	Streptococcus pneumoniae R6	57.576	98.802	0.569
ruvB	Streptococcus pneumoniae D39	57.576	98.802	0.569
ruvB	Helicobacter pylori 26695	56.173	97.006	0.545
ruvB	Synechocystis sp. PCC 6803	54.062	95.808	0.518