Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEZDF_RS01795 Genome accession   NZ_CP169539
Coordinates   386843..387388 (+) Length   181 a.a.
NCBI ID   WP_054579428.1    Uniprot ID   A0AAW6ZQA2
Organism   Vibrio alginolyticus strain BR53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 381843..392388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEZDF_RS01780 (ACEZDF_01780) uvrA 381917..384739 (-) 2823 WP_054575329.1 excinuclease ABC subunit UvrA -
  ACEZDF_RS01785 (ACEZDF_01785) galU 384889..385761 (-) 873 WP_005381239.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACEZDF_RS01790 (ACEZDF_01790) qstR 385921..386565 (-) 645 WP_005381237.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACEZDF_RS01795 (ACEZDF_01795) ssb 386843..387388 (+) 546 WP_054579428.1 single-stranded DNA-binding protein Machinery gene
  ACEZDF_RS01800 (ACEZDF_01800) csrD 387631..389640 (+) 2010 WP_005381201.1 RNase E specificity factor CsrD -
  ACEZDF_RS01805 (ACEZDF_01805) - 389652..391097 (+) 1446 WP_054579427.1 hypothetical protein -
  ACEZDF_RS01810 (ACEZDF_01810) gspM 391094..391744 (+) 651 WP_005381197.1 type II secretion system protein GspM -
  ACEZDF_RS01815 (ACEZDF_01815) - 391737..392069 (+) 333 WP_005381196.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20149.19 Da        Isoelectric Point: 4.9164

>NTDB_id=1051925 ACEZDF_RS01795 WP_054579428.1 386843..387388(+) (ssb) [Vibrio alginolyticus strain BR53]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQPQQQA
PQQSQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1051925 ACEZDF_RS01795 WP_054579428.1 386843..387388(+) (ssb) [Vibrio alginolyticus strain BR53]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTATTTGCGTAAAGGCTCTCAAGTTTACATT
GAAGGGCAACTGCAAACTCGCAAATGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAATGGTGTGATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGGCGCACCTATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAGCAACCACAACAACAGGCT
CCGCAGCAATCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.459

100

0.812
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

44.92

100

0.464
  ssb Neisseria gonorrhoeae MS11

44.92

100

0.464

Multiple sequence alignment