Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | ACEZDF_RS01575 | Genome accession | NZ_CP169539 |
| Coordinates | 335688..336281 (+) | Length | 197 a.a. |
| NCBI ID | WP_017633532.1 | Uniprot ID | A0A2I3CBG0 |
| Organism | Vibrio alginolyticus strain BR53 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330688..341281
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEZDF_RS01560 (ACEZDF_01560) | - | 331414..333975 (-) | 2562 | WP_025768081.1 | penicillin-binding protein 1A | - |
| ACEZDF_RS01565 (ACEZDF_01565) | pilM | 334120..335136 (+) | 1017 | WP_005382774.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| ACEZDF_RS01570 (ACEZDF_01570) | pilN | 335120..335695 (+) | 576 | WP_054579557.1 | PilN domain-containing protein | Machinery gene |
| ACEZDF_RS01575 (ACEZDF_01575) | pilO | 335688..336281 (+) | 594 | WP_017633532.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACEZDF_RS01580 (ACEZDF_01580) | pilP | 336271..336786 (+) | 516 | WP_005382766.1 | pilus assembly protein PilP | Machinery gene |
| ACEZDF_RS01585 (ACEZDF_01585) | pilQ | 336812..338557 (+) | 1746 | WP_025768080.1 | type IV pilus secretin PilQ | Machinery gene |
| ACEZDF_RS01590 (ACEZDF_01590) | aroK | 338745..339263 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| ACEZDF_RS01595 (ACEZDF_01595) | aroB | 339296..340396 (+) | 1101 | WP_005381318.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 22987.48 Da Isoelectric Point: 5.0885
>NTDB_id=1051921 ACEZDF_RS01575 WP_017633532.1 335688..336281(+) (pilO) [Vibrio alginolyticus strain BR53]
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
MVDWQDLEIDEMAEWPLLPQIVVIALLIMAIQGLGYWFYLKPKDEQLNHLIQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETKNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=1051921 ACEZDF_RS01575 WP_017633532.1 335688..336281(+) (pilO) [Vibrio alginolyticus strain BR53]
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCAATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
GTGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCCGAGTGGCCATTGTTGCCCCAGATTGTAGTAATCGCACTTCT
GATCATGGCGATTCAAGGCTTAGGTTATTGGTTTTACCTTAAACCGAAAGACGAACAGTTGAATCACTTGATTCAGCAGG
AGCAGACACTCAAGGTGGCATTGAAGATCAAAGCGAACAAAGTGGCAGCGTTGCCTCAGCTTCAATCTCAATTGGATGAA
CTTACCACTCGTTACGAGTTATTACTGCAACAACTGCCTGCGCAAAAAGAGCTGGCTACAATGCTCGCTTCAGTGAATGA
GCTTGGCATCGACAATAAGCTGACTTTCACCCGAATCGACTGGGGCGAAAAACAATCAGAGCACTTCCTTTATCGTCTCC
CTTTAAACATAGAGTTAACGGGCGACTTTCATGACATCGGCCATTTTTCTCAGGCAATAGCGACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAACGTGTCAGCCAAGAGAGCGAAACCCTGCACTTTCGGGTGCGTGCTAATACCTATCA
GTTTAAGCCGGAGGAGACGAAAAATGACAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
87.368 |
96.447 |
0.843 |
| pilO | Vibrio cholerae strain A1552 |
70.681 |
96.954 |
0.685 |